AIMNet2 Calculator is a package that integrates the AIMNet2 neural network potential into simulation workflows, providing fast and reliable energy, force, and property calculations for molecules with diverse elements. It excels at modeling various systems, offers flexible interfaces for popular simulation packages, and supports long-range interactions using DSF or Ewald summation Coulomb models. The tool is designed for accurate and versatile molecular simulations, suitable for large molecules and periodic calculations.

AICSImageIO is a Python tool for Image Reading, Metadata Conversion, and Image Writing for Microscopy Images. It supports various file formats like OME-TIFF, TIFF, ND2, DV, CZI, LIF, PNG, GIF, and Bio-Formats. Users can read and write metadata and imaging data, work with different file systems like local paths, HTTP URLs, s3fs, and gcsfs. The tool provides functionalities for full image reading, delayed image reading, mosaic image reading, metadata reading, xarray coordinate plane attachment, cloud IO support, and saving to OME-TIFF. It also offers benchmarking and developer resources.

HQQ is a fast and accurate model quantizer that skips the need for calibration data. It's super simple to implement (just a few lines of code for the optimizer). It can crunch through quantizing the Llama2-70B model in only 4 minutes! 🚀

RAFT (Reusable Accelerated Functions and Tools) is a C++ header-only template library with an optional shared library that contains fundamental widely-used algorithms and primitives for machine learning and information retrieval. The algorithms are CUDA-accelerated and form building blocks for more easily writing high performance applications.

OpenedAI Speech is a free, private text-to-speech server compatible with the OpenAI audio/speech API. It offers custom voice cloning and supports various models like tts-1 and tts-1-hd. Users can map their own piper voices and create custom cloned voices. The server provides multilingual support with XTTS voices and allows fixing incorrect sounds with regex. Recent changes include bug fixes, improved error handling, and updates for multilingual support. Installation can be done via Docker or manual setup, with usage instructions provided. Custom voices can be created using Piper or Coqui XTTS v2, with guidelines for preparing audio files. The tool is suitable for tasks like generating speech from text, creating custom voices, and multilingual text-to-speech applications.

Upgini is an intelligent data search engine with a Python library that helps users find and add relevant features to their ML pipeline from various public, community, and premium external data sources. It automates the optimization of connected data sources by generating an optimal set of machine learning features using large language models, GraphNNs, and recurrent neural networks. The tool aims to simplify feature search and enrichment for external data to make it a standard approach in machine learning pipelines. It democratizes access to data sources for the data science community.

Pixel Reasoner is a framework that introduces reasoning in the pixel-space for Vision-Language Models (VLMs), enabling them to directly inspect, interrogate, and infer from visual evidences. This enhances reasoning fidelity for visual tasks by equipping VLMs with visual reasoning operations like zoom-in and select-frame. The framework addresses challenges like model's imbalanced competence and reluctance to adopt pixel-space operations through a two-phase training approach involving instruction tuning and curiosity-driven reinforcement learning. With these visual operations, VLMs can interact with complex visual inputs such as images or videos to gather necessary information, leading to improved performance across visual reasoning benchmarks.

ZML is a high-performance AI inference stack built for production, using Zig language, MLIR, and Bazel. It allows users to create exciting AI projects, run pre-packaged models like MNIST, TinyLlama, OpenLLama, and Meta Llama, and compile models for accelerator runtimes. Users can also run tests, explore examples, and contribute to the project. ZML is licensed under the Apache 2.0 license.

RAPTOR introduces a novel approach to retrieval-augmented language models by constructing a recursive tree structure from documents. This allows for more efficient and context-aware information retrieval across large texts, addressing common limitations in traditional language models. Users can add documents to the tree, answer questions based on indexed documents, save and load the tree, and extend RAPTOR with custom summarization, question-answering, and embedding models. The tool is designed to be flexible and customizable for various NLP tasks.

TopicGPT is a repository containing scripts and prompts for the paper 'TopicGPT: Topic Modeling by Prompting Large Language Models' (NAACL'24). The 'topicgpt_python' package offers functions to generate high-level and specific topics, refine topics, assign topics to input text, and correct generated topics. It supports various APIs like OpenAI, VertexAI, Azure, Gemini, and vLLM for inference. Users can prepare data in JSONL format, run the pipeline using provided scripts, and evaluate topic alignment with ground-truth labels.

The Hume AI Python SDK allows users to integrate Hume APIs directly into their Python applications. Users can access complete documentation, quickstart guides, and example notebooks to get started. The SDK is designed to provide support for Hume's expressive communication platform built on scientific research. Users are encouraged to create an account at beta.hume.ai and stay updated on changes through Discord. The SDK may undergo breaking changes to improve tooling and ensure reliable releases in the future.

A toolkit for agent autonomy, evolution, and governance enabling agents to learn from experience, collaborate, communicate, and build new tools within governance guardrails. It focuses on autonomous evolution, agent self-discovery, governance firmware, self-building systems, and agent-centric architecture. The toolkit leverages existing frameworks to enable agent autonomy and self-governance, moving towards truly autonomous AI systems.

The HuggingFace Model Downloader is a utility tool for downloading models and datasets from the HuggingFace website. It offers multithreaded downloading for LFS files and ensures the integrity of downloaded models with SHA256 checksum verification. The tool provides features such as nested file downloading, filter downloads for specific LFS model files, support for HuggingFace Access Token, and configuration file support. It can be used as a library or a single binary for easy model downloading and inference in projects.

DeepPavlov is an open-source conversational AI library built on PyTorch. It is designed for the development of production-ready chatbots and complex conversational systems, as well as for research in the area of NLP and dialog systems. The library offers a wide range of models for tasks such as Named Entity Recognition, Intent/Sentence Classification, Question Answering, Sentence Similarity/Ranking, Syntactic Parsing, and more. DeepPavlov also provides embeddings like BERT, ELMo, and FastText for various languages, along with AutoML capabilities and integrations with REST API, Socket API, and Amazon AWS.

Verifiers is a library of modular components for creating RL environments and training LLM agents. It includes an async GRPO implementation built around the `transformers` Trainer, is supported by `prime-rl` for large-scale FSDP training, and can easily be integrated into any RL framework which exposes an OpenAI-compatible inference client. The library provides tools for creating and evaluating RL environments, training LLM agents, and leveraging OpenAI-compatible models for various tasks. Verifiers aims to be a reliable toolkit for building on top of, minimizing fork proliferation in the RL infrastructure ecosystem.

Mirage Persistent Kernel (MPK) is a compiler and runtime system that automatically transforms LLM inference into a single megakernel—a fused GPU kernel that performs all necessary computation and communication within a single kernel launch. This end-to-end GPU fusion approach reduces LLM inference latency by 1.2× to 6.7×, all while requiring minimal developer effort.

AIMNet2 Calculator is a package that integrates the AIMNet2 neural network potential into simulation workflows, providing fast and reliable energy, force, and property calculations for molecules with diverse elements. It excels at modeling various systems, offers flexible interfaces for popular simulation packages, and supports long-range interactions using DSF or Ewald summation Coulomb models. The tool is designed for accurate and versatile molecular simulations, suitable for large molecules and periodic calculations.

Trubrics is a Python client for event tracking and analyzing LLM interactions. It offers fast and non-blocking queuing system with automatic flushing to Trubrics API. Users can track events and LLM interactions, adjust logging verbosity, and configure flush intervals and batch sizes. The tool simplifies tracking user interactions and analyzing data for LLM applications.

Dyad is a lightweight Python library for analyzing dyadic data, which involves pairs of individuals and their interactions. It provides functions for computing various network metrics, visualizing network structures, and conducting statistical analyses on dyadic data. Dyad is designed to be user-friendly and efficient, making it suitable for researchers and practitioners working with relational data in fields such as social network analysis, communication studies, and psychology.

MD-Agent is a LLM-agent based toolset for Molecular Dynamics. It uses Langchain and a collection of tools to set up and execute molecular dynamics simulations, particularly in OpenMM. The tool assists in environment setup, installation, and usage by providing detailed steps. It also requires API keys for certain functionalities, such as OpenAI and paper-qa for literature searches. Contributions to the project are welcome, with a detailed Contributor's Guide available for interested individuals.

MD-Agent is a LLM-agent based toolset for Molecular Dynamics. It uses Langchain and a collection of tools to set up and execute molecular dynamics simulations, particularly in OpenMM. The tool assists in environment setup, installation, and usage by providing detailed steps. It also requires API keys for certain functionalities, such as OpenAI and paper-qa for literature searches. Contributions to the project are welcome, with a detailed Contributor's Guide available for interested individuals.

AIMNet2 Calculator is a package that integrates the AIMNet2 neural network potential into simulation workflows, providing fast and reliable energy, force, and property calculations for molecules with diverse elements. It excels at modeling various systems, offers flexible interfaces for popular simulation packages, and supports long-range interactions using DSF or Ewald summation Coulomb models. The tool is designed for accurate and versatile molecular simulations, suitable for large molecules and periodic calculations.

ChemBench is a project aimed at expanding chemistry benchmark tasks in a BIG-bench compatible way, providing a pipeline to benchmark frontier and open models. It allows users to run benchmarking tasks on models with existing presets, offering predefined parameters and processing steps. The library facilitates benchmarking models on the entire suite, addressing challenges such as prompt structure, parsing, and scoring methods. Users can contribute to the project by following the developer notes.

The Open MatSci ML Toolkit is a flexible framework for machine learning in materials science. It provides a unified interface to a variety of materials science datasets, as well as a set of tools for data preprocessing, model training, and evaluation. The toolkit is designed to be easy to use for both beginners and experienced researchers, and it can be used to train models for a wide range of tasks, including property prediction, materials discovery, and materials design.

NoLabs is an open-source biolab that provides easy access to state-of-the-art models for bio research. It supports various tasks, including drug discovery, protein analysis, and small molecule design. NoLabs aims to accelerate bio research by making inference models accessible to everyone.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.

This repository contains the code for the paper Fine-Tuned Language Models Generate Stable Inorganic Materials as Text. It demonstrates how finetuned LLMs can be used to generate stable materials, match or exceed the performance of domain specific models, mutate existing materials, and sample crystal structures conditioned on text descriptions. The method is distinct from CrystaLLM, which trains language models from scratch on CIF-formatted crystals.

Scientific Large Language Models (Sci-LLMs) is a repository that collects papers on scientific large language models, focusing on biology and chemistry domains. It includes textual, molecular, protein, and genomic languages, as well as multimodal language. The repository covers various large language models for tasks such as molecule property prediction, interaction prediction, protein sequence representation, protein sequence generation/design, DNA-protein interaction prediction, and RNA prediction. It also provides datasets and benchmarks for evaluating these models. The repository aims to facilitate research and development in the field of scientific language modeling.