md-agent

MD-Agent is a LLM-agent based toolset for Molecular Dynamics. It uses Langchain and a collection of tools to set up and execute molecular dynamics simulations, particularly in OpenMM. The tool assists in environment setup, installation, and usage by providing detailed steps. It also requires API keys for certain functionalities, such as OpenAI and paper-qa for literature searches. Contributions to the project are welcome, with a detailed Contributor's Guide available for interested individuals.

Jobber is an AI agent that autonomously searches and applies for jobs on the internet on behalf of the user. By controlling the browser, users can input their resume and preferences, allowing Jobber to work in the background. The tool streamlines the job application process by automating the repetitive task of job hunting and applying, saving users time and effort. Jobber offers a convenient solution for individuals looking to explore job opportunities without the hassle of manual job searching and application submission.

RouteLLM is a framework for serving and evaluating LLM routers. It allows users to launch an OpenAI-compatible API that routes requests to the best model based on cost thresholds. Trained routers are provided to reduce costs while maintaining performance. Users can easily extend the framework, compare router performance, and calibrate cost thresholds. RouteLLM supports multiple routing strategies and benchmarks, offering a lightweight server and evaluation framework. It enables users to evaluate routers on benchmarks, calibrate thresholds, and modify model pairs. Contributions for adding new routers and benchmarks are welcome.

This repository contains community-driven practical examples of building AI applications and solving various tasks with AI using open-source tools and models. Everyone is welcome to contribute, and we value everybody's contribution! There are several ways you can contribute to the Open-Source AI Cookbook: Submit an idea for a desired example/guide via GitHub Issues. Contribute a new notebook with a practical example. Improve existing examples by fixing issues/typos. Before contributing, check currently open issues and pull requests to avoid working on something that someone else is already working on.

Atomic Agents is a modular and extensible framework designed for creating powerful applications. It follows the principles of Atomic Design, emphasizing small and single-purpose components. Leveraging Pydantic for data validation and serialization, the framework offers a set of tools and agents that can be combined to build AI applications. It depends on the Instructor package and supports various APIs like OpenAI, Cohere, Anthropic, and Gemini. Atomic Agents is suitable for developers looking to create AI agents with a focus on modularity and flexibility.

This project aims to create a real-life version of GLaDOS, an aware, interactive, and embodied AI entity. It involves training a voice generator, developing a 'Personality Core,' implementing a memory system, providing vision capabilities, creating 3D-printable parts, and designing an animatronics system. The software architecture focuses on low-latency voice interactions, utilizing a circular buffer for data recording, text streaming for quick transcription, and a text-to-speech system. The project also emphasizes minimal dependencies for running on constrained hardware. The hardware system includes servo- and stepper-motors, 3D-printable parts for GLaDOS's body, animations for expression, and a vision system for tracking and interaction. Installation instructions cover setting up the TTS engine, required Python packages, compiling llama.cpp, installing an inference backend, and voice recognition setup. GLaDOS can be run using 'python glados.py' and tested using 'demo.ipynb'.

AskUI is a reliable, automated end-to-end automation tool that only depends on what is shown on your screen instead of the technology or platform you are running on.

The 'airwin2rack' repository is a collection of Airwindows audio plugins presented in various formats, including as a static library, a module for VCV Rack, and as CLAP/VST3/AU/LV2/Standalone plugins for DAWs. Users can access these plugins through different methods and interfaces, such as a uniform registry and access pattern, making it easy to integrate Airwindows plugins into their audio projects. The repository also provides instructions for updating the Airwindows sub-library and information on licensing, ensuring that users can utilize the plugins in both open and closed source environments.

Tau is a framework for building low maintenance & highly scalable cloud computing platforms that software developers will love. It aims to solve the high cost and time required to build, deploy, and scale software by providing a developer-friendly platform that offers autonomy and flexibility. Tau simplifies the process of building and maintaining a cloud computing platform, enabling developers to achieve 'Local Coding Equals Global Production' effortlessly. With features like auto-discovery, content-addressing, and support for WebAssembly, Tau empowers users to create serverless computing environments, host frontends, manage databases, and more. The platform also supports E2E testing and can be extended using a plugin system called orbit.

Boxcars is a Ruby gem that enables users to create new systems with AI composability, incorporating concepts such as LLMs, Search, SQL, Rails Active Record, Vector Search, and more. It allows users to work with Boxcars, Trains, Prompts, Engines, and VectorStores to solve problems and generate text results. The gem is designed to be user-friendly for beginners and can be extended with custom concepts. Boxcars is actively seeking ways to enhance security measures to prevent malicious actions. Users can use Boxcars for tasks like running calculations, performing searches, generating Ruby code for math operations, and interacting with APIs like OpenAI, Anthropic, and Google SERP.

Bench is a tool for evaluating LLMs for production use cases. It provides a standardized workflow for LLM evaluation with a common interface across tasks and use cases. Bench can be used to test whether open source LLMs can do as well as the top closed-source LLM API providers on specific data, and to translate the rankings on LLM leaderboards and benchmarks into scores that are relevant for actual use cases.

PSAI is a PowerShell module that empowers scripts with the intelligence of OpenAI, bridging the gap between PowerShell and AI. It enables seamless integration for tasks like file searches and data analysis, revolutionizing automation possibilities with just a few lines of code. The module supports the latest OpenAI API changes, offering features like improved file search, vector store objects, token usage control, message limits, tool choice parameter, custom conversation histories, and model configuration parameters.

Godot RL Agents is an open-source package that facilitates the integration of Machine Learning algorithms with games created in the Godot Engine. It provides interfaces for popular RL frameworks, support for memory-based agents, 2D and 3D games, AI sensors, and is licensed under MIT. Users can train agents in the Godot editor, create custom environments, export trained agents in ONNX format, and utilize advanced features like different RL training frameworks.

Cohere's Build-Your-Own-Connector framework allows integration of Cohere's Command LLM via the Chat API endpoint to any datastore/software holding text information with a search endpoint. Enables user queries grounded in proprietary information. Use-cases include question/answering, knowledge working, comms summary, and research. Repository provides code for popular datastores and a template connector. Requires Python 3.11+ and Poetry. Connectors can be built and deployed using Docker. Environment variables set authorization values. Pre-commits for linting. Connectors tailored to integrate with Cohere's Chat API for creating chatbots. Connectors return documents as JSON objects for Cohere's API to generate answers with citations.

LeanAide is a work in progress AI tool designed to assist with development using the Lean Theorem Prover. It currently offers a tool that translates natural language statements to Lean types, including theorem statements. The tool is based on GPT 3.5-turbo/GPT 4 and requires an OpenAI key for usage. Users can include LeanAide as a dependency in their projects to access the translation functionality.

COMFYUI LLM PARTY is a node library designed for LLM workflow development in ComfyUI, an extremely minimalist UI interface primarily used for AI drawing and SD model-based workflows. The project aims to provide a complete set of nodes for constructing LLM workflows, enabling users to easily integrate them into existing SD workflows. It features various functionalities such as API integration, local large model integration, RAG support, code interpreters, online queries, conditional statements, looping links for large models, persona mask attachment, and tool invocations for weather lookup, time lookup, knowledge base, code execution, web search, and single-page search. Users can rapidly develop web applications using API + Streamlit and utilize LLM as a tool node. Additionally, the project includes an omnipotent interpreter node that allows the large model to perform any task, with recommendations to use the 'show_text' node for display output.

The Azure-Analytics-and-AI-Engagement repository provides packaged Industry Scenario DREAM Demos with ARM templates (Containing a demo web application, Power BI reports, Synapse resources, AML Notebooks etc.) that can be deployed in a customer’s subscription using the CAPE tool within a matter of few hours. Partners can also deploy DREAM Demos in their own subscriptions using DPoC.

Sorrentum is an open-source project that aims to combine open-source development, startups, and brilliant students to build machine learning, AI, and Web3 / DeFi protocols geared towards finance and economics. The project provides opportunities for internships, research assistantships, and development grants, as well as the chance to work on cutting-edge problems, learn about startups, write academic papers, and get internships and full-time positions at companies working on Sorrentum applications.

TiDB is an open-source distributed SQL database that supports Hybrid Transactional and Analytical Processing (HTAP) workloads. It is MySQL compatible and features horizontal scalability, strong consistency, and high availability.

Zep is an open-source platform for building and deploying large language model (LLM) applications. It provides a suite of tools and services that make it easy to integrate LLMs into your applications, including chat history memory, embedding, vector search, and data enrichment. Zep is designed to be scalable, reliable, and easy to use, making it a great choice for developers who want to build LLM-powered applications quickly and easily.

This repository codifies the Airflow cluster that is deployed at workflow.telemetry.mozilla.org (behind SSO) and commonly referred to as "WTMO" or simply "Airflow". Some links relevant to users and developers of WTMO: * The `dags` directory in this repository contains some custom DAG definitions * Many of the DAGs registered with WTMO don't live in this repository, but are instead generated from ETL task definitions in bigquery-etl * The Data SRE team maintains a WTMO Developer Guide (behind SSO)

Mojo is a new programming language that bridges the gap between research and production by combining Python syntax and ecosystem with systems programming and metaprogramming features. Mojo is still young, but it is designed to become a superset of Python over time.

PandasAI is a Python library that makes it easy to ask questions to your data in natural language. It helps you to explore, clean, and analyze your data using generative AI.

Databend is an open-source cloud data warehouse that serves as a cost-effective alternative to Snowflake. With its focus on fast query execution and data ingestion, it's designed for complex analysis of the world's largest datasets.

Grand Challenge is a platform that provides access to large amounts of annotated training data, objective comparisons of state-of-the-art machine learning solutions, and clinical validation using real-world data. It assists researchers, data scientists, and clinicians in collaborating to develop robust machine learning solutions to problems in biomedical imaging.

This tool is designed to detect and classify Alzheimer's Disease using Deep Learning and Machine Learning algorithms on an early basis, which is further optimized using the Crow Search Algorithm (CSA). Alzheimer's is a fatal disease, and early detection is crucial for patients to predetermine their condition and prevent its progression. By analyzing MRI scanned images using Artificial Intelligence technology, this tool can classify patients who may or may not develop AD in the future. The CSA algorithm, combined with ML algorithms, has proven to be the most effective approach for this purpose.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.

FuseMedML is a Python framework designed to accelerate machine learning-based discovery in the medical field by promoting code reuse. It provides a flexible design concept where data is stored in a nested dictionary, allowing easy handling of multi-modality information. The framework includes components for creating custom models, loss functions, metrics, and data processing operators. Additionally, FuseMedML offers 'batteries included' key components such as fuse.data for data processing, fuse.eval for model evaluation, and fuse.dl for reusable deep learning components. It supports PyTorch and PyTorch Lightning libraries and encourages the creation of domain extensions for specific medical domains.

The Microsoft Health Intelligence Machine Learning Toolbox is a repository that provides low-level and high-level building blocks for Machine Learning / AI researchers and practitioners. It simplifies and streamlines work on deep learning models for healthcare and life sciences by offering tested components such as data loaders, pre-processing tools, deep learning models, and cloud integration utilities. The repository includes two Python packages, 'hi-ml-azure' for helper functions in AzureML, 'hi-ml' for ML components, and 'hi-ml-cpath' for models and workflows related to histopathology images.

TotalSegmentator is a 3D Slicer extension designed for fully automatic whole body CT segmentation using the 'TotalSegmentator' AI model. The computation time is less than one minute, making it efficient for research purposes. Users can set up GPU acceleration for faster segmentation. The tool provides a user-friendly interface for loading CT images, creating segmentations, and displaying results in 3D. Troubleshooting steps are available for common issues such as failed computation, GPU errors, and inaccurate segmentations. Contributions to the extension are welcome, following 3D Slicer contribution guidelines.

MD-Agent is a LLM-agent based toolset for Molecular Dynamics. It uses Langchain and a collection of tools to set up and execute molecular dynamics simulations, particularly in OpenMM. The tool assists in environment setup, installation, and usage by providing detailed steps. It also requires API keys for certain functionalities, such as OpenAI and paper-qa for literature searches. Contributions to the project are welcome, with a detailed Contributor's Guide available for interested individuals.