TotalSegmentator is a 3D Slicer extension designed for fully automatic whole body CT segmentation using the 'TotalSegmentator' AI model. The computation time is less than one minute, making it efficient for research purposes. Users can set up GPU acceleration for faster segmentation. The tool provides a user-friendly interface for loading CT images, creating segmentations, and displaying results in 3D. Troubleshooting steps are available for common issues such as failed computation, GPU errors, and inaccurate segmentations. Contributions to the extension are welcome, following 3D Slicer contribution guidelines.

Ollama Autocoder is a simple to use autocompletion engine that integrates with Ollama AI. It provides options for streaming functionality and requires specific settings for optimal performance. Users can easily generate text completions by pressing a key or using a command pallete. The tool is designed to work with Ollama API and a specified model, offering real-time generation of text suggestions.

Airbroke is an open-source error catcher tool designed for modern web applications. It provides a PostgreSQL-based backend with an Airbrake-compatible HTTP collector endpoint and a React-based frontend for error management. The tool focuses on simplicity, maintaining a small database footprint even under heavy data ingestion. Users can ask AI about issues, replay HTTP exceptions, and save/manage bookmarks for important occurrences. Airbroke supports multiple OAuth providers for secure user authentication and offers occurrence charts for better insights into error occurrences. The tool can be deployed in various ways, including building from source, using Docker images, deploying on Vercel, Render.com, Kubernetes with Helm, or Docker Compose. It requires Node.js, PostgreSQL, and specific system resources for deployment.

LLM_Web_search project gives local LLMs the ability to search the web by outputting a specific command. It uses regular expressions to extract search queries from model output and then utilizes duckduckgo-search to search the web. LangChain's Contextual compression and Okapi BM25 or SPLADE are used to extract relevant parts of web pages in search results. The extracted results are appended to the model's output.

GPT-Subtrans is an open-source subtitle translator that utilizes large language models (LLMs) as translation services. It supports translation between any language pairs that the language model supports. Note that GPT-Subtrans requires an active internet connection, as subtitles are sent to the provider's servers for translation, and their privacy policy applies.

AirSane is a SANE frontend and scanner server that supports Apple's AirScan protocol. It automatically detects scanners and publishes them through mDNS. Acquired images can be transferred in JPEG, PNG, and PDF/raster format. The tool is intended to be used with AirScan/eSCL clients such as Apple's Image Capture, sane-airscan on Linux, and the eSCL client built into Windows 10 and 11. It provides a simple web interface and encodes images on-the-fly to keep memory/storage demands low, making it suitable for devices like Raspberry Pi. Authentication and secure communication are supported in conjunction with a proxy server like nginx. AirSane has been reverse-engineered from Apple's AirScanScanner client communication protocol and offers a range of installation and configuration options for different operating systems.

This project provides a proof of concept for deploying a scalable, serverless LLM Generative AI inference engine on AWS Lambda. It leverages the llama.cpp project to enable the usage of more accessible CPU and RAM configurations instead of limited and expensive GPU capabilities. By deploying a container with the llama.cpp converted models onto AWS Lambda, this project offers the advantages of scale, minimizing cost, and maximizing compute availability. The project includes AWS CDK code to create and deploy a Lambda function leveraging your model of choice, with a FastAPI frontend accessible from a Lambda URL. It is important to note that you will need ggml quantized versions of your model and model sizes under 6GB, as your inference RAM requirements cannot exceed 9GB or your Lambda function will fail.

Cluster Toolkit is an open-source software by Google Cloud for deploying AI/ML and HPC environments on Google Cloud. It allows easy deployment following best practices, with high customization and extensibility. The toolkit includes tutorials, examples, and documentation for various modules designed for AI/ML and HPC use cases.

llamafile is a tool that enables users to distribute and run Large Language Models (LLMs) with a single file. It combines llama.cpp with Cosmopolitan Libc to create a framework that simplifies the complexity of LLMs into a single-file executable called a 'llamafile'. Users can run these executable files locally on most computers without the need for installation, making open LLMs more accessible to developers and end users. llamafile also provides example llamafiles for various LLM models, allowing users to try out different LLMs locally. The tool supports multiple CPU microarchitectures, CPU architectures, and operating systems, making it versatile and easy to use.

Lumigator is an open-source platform developed by Mozilla.ai to help users select the most suitable language model for their specific needs. It supports the evaluation of summarization tasks using sequence-to-sequence models such as BART and BERT, as well as causal models like GPT and Mistral. The platform aims to make model selection transparent, efficient, and empowering by providing a framework for comparing LLMs using task-specific metrics to evaluate how well a model fits a project's needs. Lumigator is in the early stages of development and plans to expand support to additional machine learning tasks and use cases in the future.

Chronon is a platform that simplifies and improves ML workflows by providing a central place to define features, ensuring point-in-time correctness for backfills, simplifying orchestration for batch and streaming pipelines, offering easy endpoints for feature fetching, and guaranteeing and measuring consistency. It offers benefits over other approaches by enabling the use of a broad set of data for training, handling large aggregations and other computationally intensive transformations, and abstracting away the infrastructure complexity of data plumbing.

HackBot is an AI-powered cybersecurity chatbot designed to provide accurate answers to cybersecurity-related queries, conduct code analysis, and scan analysis. It utilizes the Meta-LLama2 AI model through the 'LlamaCpp' library to respond coherently. The chatbot offers features like local AI/Runpod deployment support, cybersecurity chat assistance, interactive interface, clear output presentation, static code analysis, and vulnerability analysis. Users can interact with HackBot through a command-line interface and utilize it for various cybersecurity tasks.

ComfyUI-TopazVideoAI is a tool designed to facilitate the usage of TopazVideoAI for creating short AI-generated videos. Users can connect this node between video output and video save to enhance the quality of videos. The tool requires a licensed installation of TopazVideoAI and provides instructions for setting up environment variables and paths. It is recommended to use upscale factors of 2 or 4 to avoid errors. The tool encodes and decodes videos as image batches, which may result in longer processing times compared to the TopazVideoAI GUI. Common errors include 'No such filter: 'tvai_up'' which can be resolved by ensuring the correct ffmpeg path and removing conflicting ffmpeg installations.

REINVENT is a molecular design tool for de novo design, scaffold hopping, R-group replacement, linker design, molecule optimization, and other small molecule design tasks. It uses a Reinforcement Learning (RL) algorithm to generate optimized molecules compliant with a user-defined property profile defined as a multi-component score. Transfer Learning (TL) can be used to create or pre-train a model that generates molecules closer to a set of input molecules.

LLM training in simple, pure C/CUDA. There is no need for 245MB of PyTorch or 107MB of cPython. For example, training GPT-2 (CPU, fp32) is ~1,000 lines of clean code in a single file. It compiles and runs instantly, and exactly matches the PyTorch reference implementation. I chose GPT-2 as the first working example because it is the grand-daddy of LLMs, the first time the modern stack was put together.

EZKL is a library and command-line tool for doing inference for deep learning models and other computational graphs in a zk-snark (ZKML). It enables the following workflow: 1. Define a computational graph, for instance a neural network (but really any arbitrary set of operations), as you would normally in pytorch or tensorflow. 2. Export the final graph of operations as an .onnx file and some sample inputs to a .json file. 3. Point ezkl to the .onnx and .json files to generate a ZK-SNARK circuit with which you can prove statements such as: > "I ran this publicly available neural network on some private data and it produced this output" > "I ran my private neural network on some public data and it produced this output" > "I correctly ran this publicly available neural network on some public data and it produced this output" In the backend we use the collaboratively-developed Halo2 as a proof system. The generated proofs can then be verified with much less computational resources, including on-chain (with the Ethereum Virtual Machine), in a browser, or on a device.

TotalSegmentator is a 3D Slicer extension designed for fully automatic whole body CT segmentation using the 'TotalSegmentator' AI model. The computation time is less than one minute, making it efficient for research purposes. Users can set up GPU acceleration for faster segmentation. The tool provides a user-friendly interface for loading CT images, creating segmentations, and displaying results in 3D. Troubleshooting steps are available for common issues such as failed computation, GPU errors, and inaccurate segmentations. Contributions to the extension are welcome, following 3D Slicer contribution guidelines.

Grand Challenge is a platform that provides access to large amounts of annotated training data, objective comparisons of state-of-the-art machine learning solutions, and clinical validation using real-world data. It assists researchers, data scientists, and clinicians in collaborating to develop robust machine learning solutions to problems in biomedical imaging.

This tool is designed to detect and classify Alzheimer's Disease using Deep Learning and Machine Learning algorithms on an early basis, which is further optimized using the Crow Search Algorithm (CSA). Alzheimer's is a fatal disease, and early detection is crucial for patients to predetermine their condition and prevent its progression. By analyzing MRI scanned images using Artificial Intelligence technology, this tool can classify patients who may or may not develop AD in the future. The CSA algorithm, combined with ML algorithms, has proven to be the most effective approach for this purpose.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.

FuseMedML is a Python framework designed to accelerate machine learning-based discovery in the medical field by promoting code reuse. It provides a flexible design concept where data is stored in a nested dictionary, allowing easy handling of multi-modality information. The framework includes components for creating custom models, loss functions, metrics, and data processing operators. Additionally, FuseMedML offers 'batteries included' key components such as fuse.data for data processing, fuse.eval for model evaluation, and fuse.dl for reusable deep learning components. It supports PyTorch and PyTorch Lightning libraries and encourages the creation of domain extensions for specific medical domains.

The Microsoft Health Intelligence Machine Learning Toolbox is a repository that provides low-level and high-level building blocks for Machine Learning / AI researchers and practitioners. It simplifies and streamlines work on deep learning models for healthcare and life sciences by offering tested components such as data loaders, pre-processing tools, deep learning models, and cloud integration utilities. The repository includes two Python packages, 'hi-ml-azure' for helper functions in AzureML, 'hi-ml' for ML components, and 'hi-ml-cpath' for models and workflows related to histopathology images.

TotalSegmentator is a 3D Slicer extension designed for fully automatic whole body CT segmentation using the 'TotalSegmentator' AI model. The computation time is less than one minute, making it efficient for research purposes. Users can set up GPU acceleration for faster segmentation. The tool provides a user-friendly interface for loading CT images, creating segmentations, and displaying results in 3D. Troubleshooting steps are available for common issues such as failed computation, GPU errors, and inaccurate segmentations. Contributions to the extension are welcome, following 3D Slicer contribution guidelines.

MD-Agent is a LLM-agent based toolset for Molecular Dynamics. It uses Langchain and a collection of tools to set up and execute molecular dynamics simulations, particularly in OpenMM. The tool assists in environment setup, installation, and usage by providing detailed steps. It also requires API keys for certain functionalities, such as OpenAI and paper-qa for literature searches. Contributions to the project are welcome, with a detailed Contributor's Guide available for interested individuals.