FuseMedML is a Python framework designed to accelerate machine learning-based discovery in the medical field by promoting code reuse. It provides a flexible design concept where data is stored in a nested dictionary, allowing easy handling of multi-modality information. The framework includes components for creating custom models, loss functions, metrics, and data processing operators. Additionally, FuseMedML offers 'batteries included' key components such as fuse.data for data processing, fuse.eval for model evaluation, and fuse.dl for reusable deep learning components. It supports PyTorch and PyTorch Lightning libraries and encourages the creation of domain extensions for specific medical domains.

PremSQL is an open-source library designed to help developers create secure, fully local Text-to-SQL solutions using small language models. It provides essential tools for building and deploying end-to-end Text-to-SQL pipelines with customizable components, ideal for secure, autonomous AI-powered data analysis. The library offers features like Local-First approach, Customizable Datasets, Robust Executors and Evaluators, Advanced Generators, Error Handling and Self-Correction, Fine-Tuning Support, and End-to-End Pipelines. Users can fine-tune models, generate SQL queries from natural language inputs, handle errors, and evaluate model performance against predefined metrics. PremSQL is extendible for customization and private data usage.

Open Parse is a Python library for visually discerning document layouts and chunking them effectively. It is designed to fill the gap in open-source libraries for handling complex documents. Unlike text splitting, which converts a file to raw text and slices it up, Open Parse visually analyzes documents for superior LLM input. It also supports basic markdown for parsing headings, bold, and italics, and has high-precision table support, extracting tables into clean Markdown formats with accuracy that surpasses traditional tools. Open Parse is extensible, allowing users to easily implement their own post-processing steps. It is also intuitive, with great editor support and completion everywhere, making it easy to use and learn.

A Rust based tool to evaluate LLM models, prompts and model params. It automates the process of selecting the best model parameters, given an LLM model and a prompt, iterating over the possible combinations and letting the user visually inspect the results. The tool assumes the user has Ollama installed and serving endpoints, either in `localhost` or in a remote server. Key features include: * Automatically fetches models from local or remote Ollama servers * Iterates over different models and params to generate inferences * A/B test prompts on different models simultaneously * Allows multiple iterations for each combination of parameters * Makes synchronous inference calls to avoid spamming servers * Optionally outputs inference parameters and response metadata (inference time, tokens and tokens/s) * Refetching of individual inference calls * Model selection can be filtered by name * List experiments which can be downloaded in JSON format * Configurable inference timeout * Custom default parameters and system prompts can be defined in settings

Curated Transformers is a transformer library for PyTorch that provides state-of-the-art models composed of reusable components. It supports various transformer architectures, including encoders like ALBERT, BERT, and RoBERTa, and decoders like Falcon, Llama, and MPT. The library emphasizes consistent type annotations, minimal dependencies, and ease of use for education and research. It has been production-tested by Explosion and will be the default transformer implementation in spaCy 3.7.

MME-RealWorld is a benchmark designed to address real-world applications with practical relevance, featuring 13,366 high-resolution images and 29,429 annotations across 43 tasks. It aims to provide substantial recognition challenges and overcome common barriers in existing Multimodal Large Language Model benchmarks, such as small data scale, restricted data quality, and insufficient task difficulty. The dataset offers advantages in data scale, data quality, task difficulty, and real-world utility compared to existing benchmarks. It also includes a Chinese version with additional images and QA pairs focused on Chinese scenarios.

PostgresML is a powerful Postgres extension that seamlessly combines data storage and machine learning inference within your database. It enables running machine learning and AI operations directly within PostgreSQL, leveraging GPU acceleration for faster computations, integrating state-of-the-art large language models, providing built-in functions for text processing, enabling efficient similarity search, offering diverse ML algorithms, ensuring high performance, scalability, and security, supporting a wide range of NLP tasks, and seamlessly integrating with existing PostgreSQL tools and client libraries.

RAG-FiT is a library designed to improve Language Models' ability to use external information by fine-tuning models on specially created RAG-augmented datasets. The library assists in creating training data, training models using parameter-efficient finetuning (PEFT), and evaluating performance using RAG-specific metrics. It is modular, customizable via configuration files, and facilitates fast prototyping and experimentation with various RAG settings and configurations.

Nixtla is a production-ready generative pretrained transformer for time series forecasting and anomaly detection. It can accurately predict various domains such as retail, electricity, finance, and IoT with just a few lines of code. TimeGPT introduces a paradigm shift with its standout performance, efficiency, and simplicity, making it accessible even to users with minimal coding experience. The model is based on self-attention and is independently trained on a vast time series dataset to minimize forecasting error. It offers features like zero-shot inference, fine-tuning, API access, adding exogenous variables, multiple series forecasting, custom loss function, cross-validation, prediction intervals, and handling irregular timestamps.

DemoGPT is an all-in-one agent library that provides tools, prompts, frameworks, and LLM models for streamlined agent development. It leverages GPT-3.5-turbo to generate LangChain code, creating interactive Streamlit applications. The tool is designed for creating intelligent, interactive, and inclusive solutions in LLM-based application development. It offers model flexibility, iterative development, and a commitment to user engagement. Future enhancements include integrating Gorilla for autonomous API usage and adding a publicly available database for refining the generation process.

CogVideo is an open-source repository that provides pretrained text-to-video models for generating videos based on input text. It includes models like CogVideoX-2B and CogVideo, offering powerful video generation capabilities. The repository offers tools for inference, fine-tuning, and model conversion, along with demos showcasing the model's capabilities through CLI, web UI, and online experiences. CogVideo aims to facilitate the creation of high-quality videos from textual descriptions, catering to a wide range of applications.

NeMo Guardrails is an open-source toolkit for easily adding _programmable guardrails_ to LLM-based conversational applications. Guardrails (or "rails" for short) are specific ways of controlling the output of a large language model, such as not talking about politics, responding in a particular way to specific user requests, following a predefined dialog path, using a particular language style, extracting structured data, and more.

LLM-on-Ray is a comprehensive solution for building, customizing, and deploying Large Language Models (LLMs). It simplifies complex processes into manageable steps by leveraging the power of Ray for distributed computing. The tool supports pretraining, finetuning, and serving LLMs across various hardware setups, incorporating industry and Intel optimizations for performance. It offers modular workflows with intuitive configurations, robust fault tolerance, and scalability. Additionally, it provides an Interactive Web UI for enhanced usability, including a chatbot application for testing and refining models.

The 'llms' repository is a comprehensive guide on Large Language Models (LLMs), covering topics such as language modeling, applications of LLMs, statistical language modeling, neural language models, conditional language models, evaluation methods, transformer-based language models, practical LLMs like GPT and BERT, prompt engineering, fine-tuning LLMs, retrieval augmented generation, AI agents, and LLMs for computer vision. The repository provides detailed explanations, examples, and tools for working with LLMs.

SheetCopilot is an assistant agent that manipulates spreadsheets by following user commands. It leverages Large Language Models (LLMs) to interact with spreadsheets like a human expert, enabling non-expert users to complete tasks on complex software such as Google Sheets and Excel via a language interface. The tool observes spreadsheet states, polishes generated solutions based on external action documents and error feedback, and aims to improve success rate and efficiency. SheetCopilot offers a dataset with diverse task categories and operations, supporting operations like entry & manipulation, management, formatting, charts, and pivot tables. Users can interact with SheetCopilot in Excel or Google Sheets, executing tasks like calculating revenue, creating pivot tables, and plotting charts. The tool's evaluation includes performance comparisons with leading LLMs and VBA-based methods on specific datasets, showcasing its capabilities in controlling various aspects of a spreadsheet.

GPT Researcher is an autonomous agent designed for comprehensive online research on a variety of tasks. It can produce detailed, factual, and unbiased research reports with customization options. The tool addresses issues of speed, determinism, and reliability by leveraging parallelized agent work. The main idea involves running 'planner' and 'execution' agents to generate research questions, seek related information, and create research reports. GPT Researcher optimizes costs and completes tasks in around 3 minutes. Features include generating long research reports, aggregating web sources, an easy-to-use web interface, scraping web sources, and exporting reports to various formats.

FuseMedML is a Python framework designed to accelerate machine learning-based discovery in the medical field by promoting code reuse. It provides a flexible design concept where data is stored in a nested dictionary, allowing easy handling of multi-modality information. The framework includes components for creating custom models, loss functions, metrics, and data processing operators. Additionally, FuseMedML offers 'batteries included' key components such as fuse.data for data processing, fuse.eval for model evaluation, and fuse.dl for reusable deep learning components. It supports PyTorch and PyTorch Lightning libraries and encourages the creation of domain extensions for specific medical domains.

Grand Challenge is a platform that provides access to large amounts of annotated training data, objective comparisons of state-of-the-art machine learning solutions, and clinical validation using real-world data. It assists researchers, data scientists, and clinicians in collaborating to develop robust machine learning solutions to problems in biomedical imaging.

This tool is designed to detect and classify Alzheimer's Disease using Deep Learning and Machine Learning algorithms on an early basis, which is further optimized using the Crow Search Algorithm (CSA). Alzheimer's is a fatal disease, and early detection is crucial for patients to predetermine their condition and prevent its progression. By analyzing MRI scanned images using Artificial Intelligence technology, this tool can classify patients who may or may not develop AD in the future. The CSA algorithm, combined with ML algorithms, has proven to be the most effective approach for this purpose.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.

FuseMedML is a Python framework designed to accelerate machine learning-based discovery in the medical field by promoting code reuse. It provides a flexible design concept where data is stored in a nested dictionary, allowing easy handling of multi-modality information. The framework includes components for creating custom models, loss functions, metrics, and data processing operators. Additionally, FuseMedML offers 'batteries included' key components such as fuse.data for data processing, fuse.eval for model evaluation, and fuse.dl for reusable deep learning components. It supports PyTorch and PyTorch Lightning libraries and encourages the creation of domain extensions for specific medical domains.

The Microsoft Health Intelligence Machine Learning Toolbox is a repository that provides low-level and high-level building blocks for Machine Learning / AI researchers and practitioners. It simplifies and streamlines work on deep learning models for healthcare and life sciences by offering tested components such as data loaders, pre-processing tools, deep learning models, and cloud integration utilities. The repository includes two Python packages, 'hi-ml-azure' for helper functions in AzureML, 'hi-ml' for ML components, and 'hi-ml-cpath' for models and workflows related to histopathology images.

TotalSegmentator is a 3D Slicer extension designed for fully automatic whole body CT segmentation using the 'TotalSegmentator' AI model. The computation time is less than one minute, making it efficient for research purposes. Users can set up GPU acceleration for faster segmentation. The tool provides a user-friendly interface for loading CT images, creating segmentations, and displaying results in 3D. Troubleshooting steps are available for common issues such as failed computation, GPU errors, and inaccurate segmentations. Contributions to the extension are welcome, following 3D Slicer contribution guidelines.

MD-Agent is a LLM-agent based toolset for Molecular Dynamics. It uses Langchain and a collection of tools to set up and execute molecular dynamics simulations, particularly in OpenMM. The tool assists in environment setup, installation, and usage by providing detailed steps. It also requires API keys for certain functionalities, such as OpenAI and paper-qa for literature searches. Contributions to the project are welcome, with a detailed Contributor's Guide available for interested individuals.