FuseMedML is a Python framework designed to accelerate machine learning-based discovery in the medical field by promoting code reuse. It provides a flexible design concept where data is stored in a nested dictionary, allowing easy handling of multi-modality information. The framework includes components for creating custom models, loss functions, metrics, and data processing operators. Additionally, FuseMedML offers 'batteries included' key components such as fuse.data for data processing, fuse.eval for model evaluation, and fuse.dl for reusable deep learning components. It supports PyTorch and PyTorch Lightning libraries and encourages the creation of domain extensions for specific medical domains.

HuixiangDou2 is a robustly optimized GraphRAG approach that integrates multiple open-source projects to improve performance in graph-based augmented generation. It conducts comparative experiments and achieves a significant score increase, leading to a GraphRAG implementation with recognized performance. The repository provides code improvements, dense retrieval for querying entities and relationships, real domain knowledge testing, and impact analysis on accuracy.

PremSQL is an open-source library designed to help developers create secure, fully local Text-to-SQL solutions using small language models. It provides essential tools for building and deploying end-to-end Text-to-SQL pipelines with customizable components, ideal for secure, autonomous AI-powered data analysis. The library offers features like Local-First approach, Customizable Datasets, Robust Executors and Evaluators, Advanced Generators, Error Handling and Self-Correction, Fine-Tuning Support, and End-to-End Pipelines. Users can fine-tune models, generate SQL queries from natural language inputs, handle errors, and evaluate model performance against predefined metrics. PremSQL is extendible for customization and private data usage.

dLLM-RL is a revolutionary reinforcement learning framework designed for Diffusion Large Language Models. It supports various models with diverse structures, offers inference acceleration, RL training capabilities, and SFT functionalities. The tool introduces TraceRL for trajectory-aware RL and diffusion-based value models for optimization stability. Users can download and try models like TraDo-4B-Instruct and TraDo-8B-Instruct. The tool also provides support for multi-node setups and easy building of reinforcement learning methods. Additionally, it offers supervised fine-tuning strategies for different models and tasks.

Open Parse is a Python library for visually discerning document layouts and chunking them effectively. It is designed to fill the gap in open-source libraries for handling complex documents. Unlike text splitting, which converts a file to raw text and slices it up, Open Parse visually analyzes documents for superior LLM input. It also supports basic markdown for parsing headings, bold, and italics, and has high-precision table support, extracting tables into clean Markdown formats with accuracy that surpasses traditional tools. Open Parse is extensible, allowing users to easily implement their own post-processing steps. It is also intuitive, with great editor support and completion everywhere, making it easy to use and learn.

MInference is a tool designed to accelerate pre-filling for long-context Language Models (LLMs) by leveraging dynamic sparse attention. It achieves up to a 10x speedup for pre-filling on an A100 while maintaining accuracy. The tool supports various decoding LLMs, including LLaMA-style models and Phi models, and provides custom kernels for attention computation. MInference is useful for researchers and developers working with large-scale language models who aim to improve efficiency without compromising accuracy.

Instructor for PHP is a library designed for structured data extraction in PHP, powered by Large Language Models (LLMs). It simplifies the process of extracting structured, validated data from unstructured text or chat sequences. Instructor enhances workflow by providing a response model, validation capabilities, and max retries for requests. It supports classes as response models and provides features like partial results, string input, extracting scalar and enum values, and specifying data models using PHP type hints or DocBlock comments. The library allows customization of validation and provides detailed event notifications during request processing. Instructor is compatible with PHP 8.2+ and leverages PHP reflection, Symfony components, and SaloonPHP for communication with LLM API providers.

Indexify is an open-source engine for building fast data pipelines for unstructured data (video, audio, images, and documents) using reusable extractors for embedding, transformation, and feature extraction. LLM Applications can query transformed content friendly to LLMs by semantic search and SQL queries. Indexify keeps vector databases and structured databases (PostgreSQL) updated by automatically invoking the pipelines as new data is ingested into the system from external data sources. **Why use Indexify** * Makes Unstructured Data **Queryable** with **SQL** and **Semantic Search** * **Real-Time** Extraction Engine to keep indexes **automatically** updated as new data is ingested. * Create **Extraction Graph** to describe **data transformation** and extraction of **embedding** and **structured extraction**. * **Incremental Extraction** and **Selective Deletion** when content is deleted or updated. * **Extractor SDK** allows adding new extraction capabilities, and many readily available extractors for **PDF**, **Image**, and **Video** indexing and extraction. * Works with **any LLM Framework** including **Langchain**, **DSPy**, etc. * Runs on your laptop during **prototyping** and also scales to **1000s of machines** on the cloud. * Works with many **Blob Stores**, **Vector Stores**, and **Structured Databases** * We have even **Open Sourced Automation** to deploy to Kubernetes in production.

Upsonic offers a cutting-edge enterprise-ready framework for orchestrating LLM calls, agents, and computer use to complete tasks cost-effectively. It provides reliable systems, scalability, and a task-oriented structure for real-world cases. Key features include production-ready scalability, task-centric design, MCP server support, tool-calling server, computer use integration, and easy addition of custom tools. The framework supports client-server architecture and allows seamless deployment on AWS, GCP, or locally using Docker.

MME-RealWorld is a benchmark designed to address real-world applications with practical relevance, featuring 13,366 high-resolution images and 29,429 annotations across 43 tasks. It aims to provide substantial recognition challenges and overcome common barriers in existing Multimodal Large Language Model benchmarks, such as small data scale, restricted data quality, and insufficient task difficulty. The dataset offers advantages in data scale, data quality, task difficulty, and real-world utility compared to existing benchmarks. It also includes a Chinese version with additional images and QA pairs focused on Chinese scenarios.

PostgresML is a powerful Postgres extension that seamlessly combines data storage and machine learning inference within your database. It enables running machine learning and AI operations directly within PostgreSQL, leveraging GPU acceleration for faster computations, integrating state-of-the-art large language models, providing built-in functions for text processing, enabling efficient similarity search, offering diverse ML algorithms, ensuring high performance, scalability, and security, supporting a wide range of NLP tasks, and seamlessly integrating with existing PostgreSQL tools and client libraries.

CrewAI is a cutting-edge framework designed to orchestrate role-playing autonomous AI agents. By fostering collaborative intelligence, CrewAI empowers agents to work together seamlessly, tackling complex tasks. It enables AI agents to assume roles, share goals, and operate in a cohesive unit, much like a well-oiled crew. Whether you're building a smart assistant platform, an automated customer service ensemble, or a multi-agent research team, CrewAI provides the backbone for sophisticated multi-agent interactions. With features like role-based agent design, autonomous inter-agent delegation, flexible task management, and support for various LLMs, CrewAI offers a dynamic and adaptable solution for both development and production workflows.

Nixtla is a production-ready generative pretrained transformer for time series forecasting and anomaly detection. It can accurately predict various domains such as retail, electricity, finance, and IoT with just a few lines of code. TimeGPT introduces a paradigm shift with its standout performance, efficiency, and simplicity, making it accessible even to users with minimal coding experience. The model is based on self-attention and is independently trained on a vast time series dataset to minimize forecasting error. It offers features like zero-shot inference, fine-tuning, API access, adding exogenous variables, multiple series forecasting, custom loss function, cross-validation, prediction intervals, and handling irregular timestamps.

POML (Prompt Orchestration Markup Language) is a novel markup language designed to bring structure, maintainability, and versatility to advanced prompt engineering for Large Language Models (LLMs). It addresses common challenges in prompt development, such as lack of structure, complex data integration, format sensitivity, and inadequate tooling. POML provides a systematic way to organize prompt components, integrate diverse data types seamlessly, and manage presentation variations, empowering developers to create more sophisticated and reliable LLM applications.

DemoGPT is an all-in-one agent library that provides tools, prompts, frameworks, and LLM models for streamlined agent development. It leverages GPT-3.5-turbo to generate LangChain code, creating interactive Streamlit applications. The tool is designed for creating intelligent, interactive, and inclusive solutions in LLM-based application development. It offers model flexibility, iterative development, and a commitment to user engagement. Future enhancements include integrating Gorilla for autonomous API usage and adding a publicly available database for refining the generation process.

LLM-on-Ray is a comprehensive solution for building, customizing, and deploying Large Language Models (LLMs). It simplifies complex processes into manageable steps by leveraging the power of Ray for distributed computing. The tool supports pretraining, finetuning, and serving LLMs across various hardware setups, incorporating industry and Intel optimizations for performance. It offers modular workflows with intuitive configurations, robust fault tolerance, and scalability. Additionally, it provides an Interactive Web UI for enhanced usability, including a chatbot application for testing and refining models.

FuseMedML is a Python framework designed to accelerate machine learning-based discovery in the medical field by promoting code reuse. It provides a flexible design concept where data is stored in a nested dictionary, allowing easy handling of multi-modality information. The framework includes components for creating custom models, loss functions, metrics, and data processing operators. Additionally, FuseMedML offers 'batteries included' key components such as fuse.data for data processing, fuse.eval for model evaluation, and fuse.dl for reusable deep learning components. It supports PyTorch and PyTorch Lightning libraries and encourages the creation of domain extensions for specific medical domains.

Grand Challenge is a platform that provides access to large amounts of annotated training data, objective comparisons of state-of-the-art machine learning solutions, and clinical validation using real-world data. It assists researchers, data scientists, and clinicians in collaborating to develop robust machine learning solutions to problems in biomedical imaging.

This tool is designed to detect and classify Alzheimer's Disease using Deep Learning and Machine Learning algorithms on an early basis, which is further optimized using the Crow Search Algorithm (CSA). Alzheimer's is a fatal disease, and early detection is crucial for patients to predetermine their condition and prevent its progression. By analyzing MRI scanned images using Artificial Intelligence technology, this tool can classify patients who may or may not develop AD in the future. The CSA algorithm, combined with ML algorithms, has proven to be the most effective approach for this purpose.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.

FuseMedML is a Python framework designed to accelerate machine learning-based discovery in the medical field by promoting code reuse. It provides a flexible design concept where data is stored in a nested dictionary, allowing easy handling of multi-modality information. The framework includes components for creating custom models, loss functions, metrics, and data processing operators. Additionally, FuseMedML offers 'batteries included' key components such as fuse.data for data processing, fuse.eval for model evaluation, and fuse.dl for reusable deep learning components. It supports PyTorch and PyTorch Lightning libraries and encourages the creation of domain extensions for specific medical domains.

The Microsoft Health Intelligence Machine Learning Toolbox is a repository that provides low-level and high-level building blocks for Machine Learning / AI researchers and practitioners. It simplifies and streamlines work on deep learning models for healthcare and life sciences by offering tested components such as data loaders, pre-processing tools, deep learning models, and cloud integration utilities. The repository includes two Python packages, 'hi-ml-azure' for helper functions in AzureML, 'hi-ml' for ML components, and 'hi-ml-cpath' for models and workflows related to histopathology images.

TotalSegmentator is a 3D Slicer extension designed for fully automatic whole body CT segmentation using the 'TotalSegmentator' AI model. The computation time is less than one minute, making it efficient for research purposes. Users can set up GPU acceleration for faster segmentation. The tool provides a user-friendly interface for loading CT images, creating segmentations, and displaying results in 3D. Troubleshooting steps are available for common issues such as failed computation, GPU errors, and inaccurate segmentations. Contributions to the extension are welcome, following 3D Slicer contribution guidelines.

MD-Agent is a LLM-agent based toolset for Molecular Dynamics. It uses Langchain and a collection of tools to set up and execute molecular dynamics simulations, particularly in OpenMM. The tool assists in environment setup, installation, and usage by providing detailed steps. It also requires API keys for certain functionalities, such as OpenAI and paper-qa for literature searches. Contributions to the project are welcome, with a detailed Contributor's Guide available for interested individuals.