GROMACS Copilot is an agent designed to automate molecular dynamics simulations for proteins in water using GROMACS. It handles system setup, simulation execution, and result analysis automatically, providing outputs such as RMSD, RMSF, Rg, and H-bonds. Users can interact with the agent through prompts and API keys from DeepSeek and OpenAI. The tool aims to simplify the process of running MD simulations, allowing users to focus on other tasks while it handles the technical aspects of the simulations.

CrewAI is a cutting-edge framework designed to orchestrate role-playing autonomous AI agents. By fostering collaborative intelligence, CrewAI empowers agents to work together seamlessly, tackling complex tasks. It enables AI agents to assume roles, share goals, and operate in a cohesive unit, much like a well-oiled crew. Whether you're building a smart assistant platform, an automated customer service ensemble, or a multi-agent research team, CrewAI provides the backbone for sophisticated multi-agent interactions. With features like role-based agent design, autonomous inter-agent delegation, flexible task management, and support for various LLMs, CrewAI offers a dynamic and adaptable solution for both development and production workflows.

FuseMedML is a Python framework designed to accelerate machine learning-based discovery in the medical field by promoting code reuse. It provides a flexible design concept where data is stored in a nested dictionary, allowing easy handling of multi-modality information. The framework includes components for creating custom models, loss functions, metrics, and data processing operators. Additionally, FuseMedML offers 'batteries included' key components such as fuse.data for data processing, fuse.eval for model evaluation, and fuse.dl for reusable deep learning components. It supports PyTorch and PyTorch Lightning libraries and encourages the creation of domain extensions for specific medical domains.

Synthora is a lightweight and extensible framework for LLM-driven Agents and ALM research. It aims to simplify the process of building, testing, and evaluating agents by providing essential components. The framework allows for easy agent assembly with a single config, reducing the effort required for tuning and sharing agents. Although in early development stages with unstable APIs, Synthora welcomes feedback and contributions to enhance its stability and functionality.

This repository contains a sophisticated deterministic graph-based solution for answering complex questions using a controllable autonomous agent. The solution is designed to ensure that answers are solely based on the provided data, avoiding hallucinations. It involves various steps such as PDF loading, text preprocessing, summarization, database creation, encoding, and utilizing large language models. The algorithm follows a detailed workflow involving planning, retrieval, answering, replanning, content distillation, and performance evaluation. Heuristics and techniques implemented focus on content encoding, anonymizing questions, task breakdown, content distillation, chain of thought answering, verification, and model performance evaluation.

ShortGPT is a powerful framework for automating content creation, simplifying video creation, footage sourcing, voiceover synthesis, and editing tasks. It offers features like automated editing framework, scripts and prompts, voiceover support in multiple languages, caption generation, asset sourcing, and persistency of editing variables. The tool is designed for youtube automation, Tiktok creativity program automation, and offers customization options for efficient and creative content creation.

The Persian License Plate Recognition (PLPR) system is a state-of-the-art solution designed for detecting and recognizing Persian license plates in images and video streams. Leveraging advanced deep learning models and a user-friendly interface, it ensures reliable performance across different scenarios. The system offers advanced detection using YOLOv5 models, precise recognition of Persian characters, real-time processing capabilities, and a user-friendly GUI. It is well-suited for applications in traffic monitoring, automated vehicle identification, and similar fields. The system's architecture includes modules for resident management, entrance management, and a detailed flowchart explaining the process from system initialization to displaying results in the GUI. Hardware requirements include an Intel Core i5 processor, 8 GB RAM, a dedicated GPU with at least 4 GB VRAM, and an SSD with 20 GB of free space. The system can be installed by cloning the repository and installing required Python packages. Users can customize the video source for processing and run the application to upload and process images or video streams. The system's GUI allows for parameter adjustments to optimize performance, and the Wiki provides in-depth information on the system's architecture and model training.

draive is an open-source Python library designed to simplify and accelerate the development of LLM-based applications. It offers abstract building blocks for connecting functionalities with large language models, flexible integration with various AI solutions, and a user-friendly framework for building scalable data processing pipelines. The library follows a function-oriented design, allowing users to represent complex programs as simple functions. It also provides tools for measuring and debugging functionalities, ensuring type safety and efficient asynchronous operations for modern Python apps.

crewAI is a cutting-edge framework for orchestrating role-playing, autonomous AI agents. By fostering collaborative intelligence, CrewAI empowers agents to work together seamlessly, tackling complex tasks. It provides a flexible and structured approach to AI collaboration, enabling users to define agents with specific roles, goals, and tools, and assign them tasks within a customizable process. crewAI supports integration with various LLMs, including OpenAI, and offers features such as autonomous task delegation, flexible task management, and output parsing. It is open-source and welcomes contributions, with a focus on improving the library based on usage data collected through anonymous telemetry.

This is the official repository for 'Alignment Data Synthesis from Scratch by Prompting Aligned LLMs with Nothing'. Magpie is a tool designed to synthesize high-quality instruction data at scale by extracting it directly from an aligned Large Language Models (LLMs). It aims to democratize AI by generating large-scale alignment data and enhancing the transparency of model alignment processes. Magpie has been tested on various model families and can be used to fine-tune models for improved performance on alignment benchmarks such as AlpacaEval, ArenaHard, and WildBench.

Sentience is a tool that allows developers to create autonomous AI agents on-chain with verifiable proofs. It leverages a Trusted Execution Environment (TEE) architecture to ensure secure execution of AI calls and provides transparency through cryptographic attestations posted on Solana's blockchain. The tool enhances market potential by transforming agents into cryptographically verifiable entities, addressing the need for trust in AI development. Sentience offers features like OpenAI compatibility, on-chain verifiability, an explorer for agent history, and an easy-to-use developer experience. The repository includes SDKs for Python and JavaScript, along with components for verified inference and instructions for verifying the TEE architecture.

HF-LLM.rs is a CLI tool for accessing Large Language Models (LLMs) like Llama 3.1, Mistral, Gemma 2, Cohere and more hosted on Hugging Face. It allows interaction with various models, providing input and receiving responses in a terminal environment. Users can select models, input prompts, receive streaming output, and engage in chat mode. The tool supports a variety of models available on Hugging Face infrastructure, with the list continuously updated. Some models may require a Pro subscription for access.

AI-Driven Research Assistant is an advanced AI-powered system utilizing specialized agents for data analysis, visualization, and report generation. It integrates LangChain, OpenAI's GPT models, and LangGraph for complex research processes. Key features include hypothesis generation, data processing, web search, code generation, and report writing. The system's unique Note Taker agent maintains project state, reducing overhead and improving context retention. System requirements include Python 3.10+ and Jupyter Notebook environment. Installation involves cloning the repository, setting up a Conda virtual environment, installing dependencies, and configuring environment variables. Usage instructions include setting data, running Jupyter Notebook, customizing research tasks, and viewing results. Main components include agents for hypothesis generation, process supervision, visualization, code writing, search, report writing, quality review, and note-taking. Workflow involves hypothesis generation, processing, quality review, and revision. Customization is possible by modifying agent creation and workflow definition. Current issues include OpenAI errors, NoteTaker efficiency, runtime optimization, and refiner improvement. Contributions via pull requests are welcome under the MIT License.

Tara is a powerful node for ComfyUI that integrates Large Language Models (LLMs) to enhance and automate workflow processes. With Tara, you can create complex, intelligent workflows that refine and generate content, manage API keys, and seamlessly integrate various LLMs into your projects. It comprises nodes for handling OpenAI-compatible APIs, saving and loading API keys, composing multiple texts, and using predefined templates for OpenAI and Groq. Tara supports OpenAI and Grok models with plans to expand support to together.ai and Replicate. Users can install Tara via Git URL or ComfyUI Manager and utilize it for tasks like input guidance, saving and loading API keys, and generating text suitable for chaining in workflows.

llm-ls is a Language Server Protocol (LSP) server that utilizes Large Language Models (LLMs) to enhance the development experience. It aims to serve as a foundation for IDE extensions by simplifying interactions with LLMs, enabling lightweight extension code. The server offers features such as context-based prompt generation, telemetry for retraining, code completion based on AST analysis, and compatibility with various backends like Hugging Face's APIs and llama.cpp server bindings.

Cosdata is a cutting-edge AI data platform designed to power the next generation search pipelines. It features immutability, version control, and excels in semantic search, structured knowledge graphs, hybrid search capabilities, real-time search at scale, and ML pipeline integration. The platform is customizable, scalable, efficient, enterprise-grade, easy to use, and can manage multi-modal data. It offers high performance, indexing, low latency, and high requests per second. Cosdata is designed to meet the demands of modern search applications, empowering businesses to harness the full potential of their data.

GROMACS Copilot is an agent designed to automate molecular dynamics simulations for proteins in water using GROMACS. It handles system setup, simulation execution, and result analysis automatically, providing outputs such as RMSD, RMSF, Rg, and H-bonds. Users can interact with the agent through prompts and API keys from DeepSeek and OpenAI. The tool aims to simplify the process of running MD simulations, allowing users to focus on other tasks while it handles the technical aspects of the simulations.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.

Generative AI models have shown tremendous usefulness in increasing accessibility and automation of a wide range of tasks. This repository contains the `biochatter` Python package, a generic backend library for the connection of biomedical applications to conversational AI. It aims to provide a common framework for deploying, testing, and evaluating diverse models and auxiliary technologies in the biomedical domain. BioChatter is part of the BioCypher ecosystem, connecting natively to BioCypher knowledge graphs.

ADMET-AI is a platform for ADMET prediction using Chemprop-RDKit models trained on ADMET datasets from the Therapeutics Data Commons. It offers command line, Python API, and web server interfaces for making ADMET predictions on new molecules. The platform can be easily installed using pip and supports GPU acceleration. It also provides options for processing TDC data, plotting results, and hosting a web server. ADMET-AI is a machine learning platform for evaluating large-scale chemical libraries.

AI-Drug-Discovery-Design is a repository focused on Artificial Intelligence-assisted Drug Discovery and Design. It explores the use of AI technology to accelerate and optimize the drug development process. The advantages of AI in drug design include speeding up research cycles, improving accuracy through data-driven models, reducing costs by minimizing experimental redundancies, and enabling personalized drug design for specific patients or disease characteristics.

NVIDIA BioNeMo Framework is a collection of programming tools, libraries, and models for computational drug discovery. It accelerates building and adapting biomolecular AI models by providing domain-specific, optimized models and tooling for GPU-based computational resources. The framework offers comprehensive documentation and support for both community and enterprise users.

New AI Drug Discovery is a repository focused on the applications of Large Language Models (LLM) in drug discovery. It provides resources, tools, and examples for leveraging LLM technology in the pharmaceutical industry. The repository aims to showcase the potential of using AI-driven approaches to accelerate the drug discovery process, improve target identification, and optimize molecular design. By exploring the intersection of artificial intelligence and drug development, this repository offers insights into the latest advancements in computational biology and cheminformatics.

GROMACS Copilot is an agent designed to automate molecular dynamics simulations for proteins in water using GROMACS. It handles system setup, simulation execution, and result analysis automatically, providing outputs such as RMSD, RMSF, Rg, and H-bonds. Users can interact with the agent through prompts and API keys from DeepSeek and OpenAI. The tool aims to simplify the process of running MD simulations, allowing users to focus on other tasks while it handles the technical aspects of the simulations.

KG-RAG (Knowledge Graph-based Retrieval Augmented Generation) is a task agnostic framework that combines the explicit knowledge of a Knowledge Graph (KG) with the implicit knowledge of a Large Language Model (LLM). KG-RAG extracts "prompt-aware context" from a KG, which is defined as the minimal context sufficient enough to respond to the user prompt. This framework empowers a general-purpose LLM by incorporating an optimized domain-specific 'prompt-aware context' from a biomedical KG. KG-RAG is specifically designed for running prompts related to Diseases.