AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.

AI2BMD is a program for efficiently simulating protein molecular dynamics with ab initio accuracy. The repository contains datasets, simulation programs, and public materials related to AI2BMD. It provides a Docker image for easy deployment and a standalone launcher program. Users can run simulations by downloading the launcher script and specifying simulation parameters. The repository also includes ready-to-use protein structures for testing. AI2BMD is designed for x86-64 GNU/Linux systems with recommended hardware specifications. The related research includes model architectures like ViSNet, Geoformer, and fine-grained force metrics for MLFF. Citation information and contact details for the AI2BMD Team are provided.

InsPLAD is a dataset and benchmark for power line asset inspection in UAV images. It contains 10,607 high-resolution UAV color images of seventeen unique power line assets with six defects. The dataset is used for object detection, defect classification, and anomaly detection tasks in computer vision. InsPLAD offers challenges like multi-scale objects, intra-class variation, cluttered background, and varied lighting conditions, aiming to improve state-of-the-art methods in the field.

Gemini is an open-source model designed to handle multiple modalities such as text, audio, images, and videos. It utilizes a transformer architecture with special decoders for text and image generation. The model processes input sequences by transforming them into tokens and then decoding them to generate image outputs. Gemini differs from other models by directly feeding image embeddings into the transformer instead of using a visual transformer encoder. The model also includes a component called Codi for conditional generation. Gemini aims to effectively integrate image, audio, and video embeddings to enhance its performance.

PyTorch Forecasting is a PyTorch-based package for time series forecasting with state-of-the-art network architectures. It offers a high-level API for training networks on pandas data frames and utilizes PyTorch Lightning for scalable training on GPUs and CPUs. The package aims to simplify time series forecasting with neural networks by providing a flexible API for professionals and default settings for beginners. It includes a timeseries dataset class, base model class, multiple neural network architectures, multi-horizon timeseries metrics, and hyperparameter tuning with optuna. PyTorch Forecasting is built on pytorch-lightning for easy training on various hardware configurations.

GEPA (Genetic-Pareto) is a framework for optimizing arbitrary systems composed of text components like AI prompts, code snippets, or textual specs against any evaluation metric. It employs LLMs to reflect on system behavior, using feedback from execution and evaluation traces to drive targeted improvements. Through iterative mutation, reflection, and Pareto-aware candidate selection, GEPA evolves robust, high-performing variants with minimal evaluations, co-evolving multiple components in modular systems for domain-specific gains. The repository provides the official implementation of the GEPA algorithm as proposed in the paper titled 'GEPA: Reflective Prompt Evolution Can Outperform Reinforcement Learning'.

FuseMedML is a Python framework designed to accelerate machine learning-based discovery in the medical field by promoting code reuse. It provides a flexible design concept where data is stored in a nested dictionary, allowing easy handling of multi-modality information. The framework includes components for creating custom models, loss functions, metrics, and data processing operators. Additionally, FuseMedML offers 'batteries included' key components such as fuse.data for data processing, fuse.eval for model evaluation, and fuse.dl for reusable deep learning components. It supports PyTorch and PyTorch Lightning libraries and encourages the creation of domain extensions for specific medical domains.

The Open MatSci ML Toolkit is a flexible framework for machine learning in materials science. It provides a unified interface to a variety of materials science datasets, as well as a set of tools for data preprocessing, model training, and evaluation. The toolkit is designed to be easy to use for both beginners and experienced researchers, and it can be used to train models for a wide range of tasks, including property prediction, materials discovery, and materials design.

Semlib is a Python library for building data processing and data analysis pipelines that leverage the power of large language models (LLMs). It provides functional programming primitives like map, reduce, sort, and filter, programmed with natural language descriptions. Semlib handles complexities such as prompting, parsing, concurrency control, caching, and cost tracking. The library breaks down sophisticated data processing tasks into simpler steps to improve quality, feasibility, latency, cost, security, and flexibility of data processing tasks.

llm-analysis is a tool designed for Latency and Memory Analysis of Transformer Models for Training and Inference. It automates the calculation of training or inference latency and memory usage for Large Language Models (LLMs) or Transformers based on specified model, GPU, data type, and parallelism configurations. The tool helps users to experiment with different setups theoretically, understand system performance, and optimize training/inference scenarios. It supports various parallelism schemes, communication methods, activation recomputation options, data types, and fine-tuning strategies. Users can integrate llm-analysis in their code using the `LLMAnalysis` class or use the provided entry point functions for command line interface. The tool provides lower-bound estimations of memory usage and latency, and aims to assist in achieving feasible and optimal setups for training or inference.

Nixtla is a production-ready generative pretrained transformer for time series forecasting and anomaly detection. It can accurately predict various domains such as retail, electricity, finance, and IoT with just a few lines of code. TimeGPT introduces a paradigm shift with its standout performance, efficiency, and simplicity, making it accessible even to users with minimal coding experience. The model is based on self-attention and is independently trained on a vast time series dataset to minimize forecasting error. It offers features like zero-shot inference, fine-tuning, API access, adding exogenous variables, multiple series forecasting, custom loss function, cross-validation, prediction intervals, and handling irregular timestamps.

Reflection-Tuning is a project focused on improving the quality of instruction-tuning data through a reflection-based method. It introduces Selective Reflection-Tuning, where the student model can decide whether to accept the improvements made by the teacher model. The project aims to generate high-quality instruction-response pairs by defining specific criteria for the oracle model to follow and respond to. It also evaluates the efficacy and relevance of instruction-response pairs using the r-IFD metric. The project provides code for reflection and selection processes, along with data and model weights for both V1 and V2 methods.

GOLEM is an open-source AI framework focused on optimization and learning of structured graph-based models using meta-heuristic methods. It emphasizes the potential of meta-heuristics in complex problem spaces where gradient-based methods are not suitable, and the importance of structured models in various problem domains. The framework offers features like structured model optimization, metaheuristic methods, multi-objective optimization, constrained optimization, extensibility, interpretability, and reproducibility. It can be applied to optimization problems represented as directed graphs with defined fitness functions. GOLEM has applications in areas like AutoML, Bayesian network structure search, differential equation discovery, geometric design, and neural architecture search. The project structure includes packages for core functionalities, adapters, graph representation, optimizers, genetic algorithms, utilities, serialization, visualization, examples, and testing. Contributions are welcome, and the project is supported by ITMO University's Research Center Strong Artificial Intelligence in Industry.

The 'vector-search-class-notes' repository contains class materials for a course on Long Term Memory in AI, focusing on vector search and databases. The course covers theoretical foundations and practical implementation of vector search applications, algorithms, and systems. It explores the intersection of Artificial Intelligence and Database Management Systems, with topics including text embeddings, image embeddings, low dimensional vector search, dimensionality reduction, approximate nearest neighbor search, clustering, quantization, and graph-based indexes. The repository also includes information on the course syllabus, project details, selected literature, and contributions from industry experts in the field.

Deepfabric is an SDK and CLI tool that leverages large language models to generate high-quality synthetic datasets. It's designed for researchers and developers building teacher-student distillation pipelines, creating evaluation benchmarks for models and agents, or conducting research requiring diverse training data. The key innovation lies in Deepfabric's graph and tree-based architecture, which uses structured topic nodes as generation seeds. This approach ensures the creation of datasets that are both highly diverse and domain-specific, while minimizing redundancy and duplication across generated samples.

Quantus is a toolkit designed for the evaluation of neural network explanations. It offers more than 30 metrics in 6 categories for eXplainable Artificial Intelligence (XAI) evaluation. The toolkit supports different data types (image, time-series, tabular, NLP) and models (PyTorch, TensorFlow). It provides built-in support for explanation methods like captum, tf-explain, and zennit. Quantus is under active development and aims to provide a comprehensive set of quantitative evaluation metrics for XAI methods.

MathCoder is a repository focused on enhancing mathematical reasoning by fine-tuning open-source language models to use code for modeling and deriving math equations. It introduces MathCodeInstruct dataset with solutions interleaving natural language, code, and execution results. The repository provides MathCoder models capable of generating code-based solutions for challenging math problems, achieving state-of-the-art scores on MATH and GSM8K datasets. It offers tools for model deployment, inference, and evaluation, along with a citation for referencing the work.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.

This repository contains the code for HOLD, a method that jointly reconstructs hands and objects from monocular videos without assuming a pre-scanned object template. It can reconstruct 3D geometries of novel objects and hands, enabling template-free bimanual hand-object reconstruction, textureless object interaction with hands, and multiple objects interaction with hands. The repository provides instructions to download in-the-wild videos from HOLD, preprocess and train on custom videos, a volumetric rendering framework, a generalized codebase for single and two hand interaction with objects, a viewer to interact with predictions, and code to evaluate and compare with HOLD in HO3D. The repository also includes documentation for setup, training, evaluation, visualization, preprocessing custom sequences, and using HOLD on ARCTIC.

vLLM is a fast and easy-to-use library for LLM inference and serving. It is designed to be efficient, flexible, and easy to use. vLLM can be used to serve a variety of LLM models, including Hugging Face models. It supports a variety of decoding algorithms, including parallel sampling, beam search, and more. vLLM also supports tensor parallelism for distributed inference and streaming outputs. It is open-source and available on GitHub.

The Qianfan SDK provides best practices for large model toolchains, allowing AI workflows and AI-native applications to access the Qianfan large model platform elegantly and conveniently. The core capabilities of the SDK include three parts: large model reasoning, large model training, and general and extension: * `Large model reasoning`: Implements interface encapsulation for reasoning of Yuyan (ERNIE-Bot) series, open source large models, etc., supporting dialogue, completion, Embedding, etc. * `Large model training`: Based on platform capabilities, it supports end-to-end large model training process, including training data, fine-tuning/pre-training, and model services. * `General and extension`: General capabilities include common AI development tools such as Prompt/Debug/Client. The extension capability is based on the characteristics of Qianfan to adapt to common middleware frameworks.

Dstack is an open-source orchestration engine for running AI workloads in any cloud. It supports a wide range of cloud providers (such as AWS, GCP, Azure, Lambda, TensorDock, Vast.ai, CUDO, RunPod, etc.) as well as on-premises infrastructure. With Dstack, you can easily set up and manage dev environments, tasks, services, and pools for your AI workloads.

**RVC_CLI: Retrieval-based Voice Conversion Command Line Interface** This command-line interface (CLI) provides a comprehensive set of tools for voice conversion, enabling you to modify the pitch, timbre, and other characteristics of audio recordings. It leverages advanced machine learning models to achieve realistic and high-quality voice conversions. **Key Features:** * **Inference:** Convert the pitch and timbre of audio in real-time or process audio files in batch mode. * **TTS Inference:** Synthesize speech from text using a variety of voices and apply voice conversion techniques. * **Training:** Train custom voice conversion models to meet specific requirements. * **Model Management:** Extract, blend, and analyze models to fine-tune and optimize performance. * **Audio Analysis:** Inspect audio files to gain insights into their characteristics. * **API:** Integrate the CLI's functionality into your own applications or workflows. **Applications:** The RVC_CLI finds applications in various domains, including: * **Music Production:** Create unique vocal effects, harmonies, and backing vocals. * **Voiceovers:** Generate voiceovers with different accents, emotions, and styles. * **Audio Editing:** Enhance or modify audio recordings for podcasts, audiobooks, and other content. * **Research and Development:** Explore and advance the field of voice conversion technology. **For Jobs:** * Audio Engineer * Music Producer * Voiceover Artist * Audio Editor * Machine Learning Engineer **AI Keywords:** * Voice Conversion * Pitch Shifting * Timbre Modification * Machine Learning * Audio Processing **For Tasks:** * Convert Pitch * Change Timbre * Synthesize Speech * Train Model * Analyze Audio

llm-finetuning is a repository that provides a serverless twist to the popular axolotl fine-tuning library using Modal's serverless infrastructure. It allows users to quickly fine-tune any LLM model with state-of-the-art optimizations like Deepspeed ZeRO, LoRA adapters, Flash attention, and Gradient checkpointing. The repository simplifies the fine-tuning process by not exposing all CLI arguments, instead allowing users to specify options in a config file. It supports efficient training and scaling across multiple GPUs, making it suitable for production-ready fine-tuning jobs.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.

Generative AI models have shown tremendous usefulness in increasing accessibility and automation of a wide range of tasks. This repository contains the `biochatter` Python package, a generic backend library for the connection of biomedical applications to conversational AI. It aims to provide a common framework for deploying, testing, and evaluating diverse models and auxiliary technologies in the biomedical domain. BioChatter is part of the BioCypher ecosystem, connecting natively to BioCypher knowledge graphs.

ADMET-AI is a platform for ADMET prediction using Chemprop-RDKit models trained on ADMET datasets from the Therapeutics Data Commons. It offers command line, Python API, and web server interfaces for making ADMET predictions on new molecules. The platform can be easily installed using pip and supports GPU acceleration. It also provides options for processing TDC data, plotting results, and hosting a web server. ADMET-AI is a machine learning platform for evaluating large-scale chemical libraries.

AI-Drug-Discovery-Design is a repository focused on Artificial Intelligence-assisted Drug Discovery and Design. It explores the use of AI technology to accelerate and optimize the drug development process. The advantages of AI in drug design include speeding up research cycles, improving accuracy through data-driven models, reducing costs by minimizing experimental redundancies, and enabling personalized drug design for specific patients or disease characteristics.

NVIDIA BioNeMo Framework is a collection of programming tools, libraries, and models for computational drug discovery. It accelerates building and adapting biomolecular AI models by providing domain-specific, optimized models and tooling for GPU-based computational resources. The framework offers comprehensive documentation and support for both community and enterprise users.

New AI Drug Discovery is a repository focused on the applications of Large Language Models (LLM) in drug discovery. It provides resources, tools, and examples for leveraging LLM technology in the pharmaceutical industry. The repository aims to showcase the potential of using AI-driven approaches to accelerate the drug discovery process, improve target identification, and optimize molecular design. By exploring the intersection of artificial intelligence and drug development, this repository offers insights into the latest advancements in computational biology and cheminformatics.

GROMACS Copilot is an agent designed to automate molecular dynamics simulations for proteins in water using GROMACS. It handles system setup, simulation execution, and result analysis automatically, providing outputs such as RMSD, RMSF, Rg, and H-bonds. Users can interact with the agent through prompts and API keys from DeepSeek and OpenAI. The tool aims to simplify the process of running MD simulations, allowing users to focus on other tasks while it handles the technical aspects of the simulations.

Biomni is a general-purpose biomedical AI agent designed to autonomously execute a wide range of research tasks across diverse biomedical subfields. By integrating cutting-edge large language model (LLM) reasoning with retrieval-augmented planning and code-based execution, Biomni helps scientists dramatically enhance research productivity and generate testable hypotheses.