AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.

Gemini is an open-source model designed to handle multiple modalities such as text, audio, images, and videos. It utilizes a transformer architecture with special decoders for text and image generation. The model processes input sequences by transforming them into tokens and then decoding them to generate image outputs. Gemini differs from other models by directly feeding image embeddings into the transformer instead of using a visual transformer encoder. The model also includes a component called Codi for conditional generation. Gemini aims to effectively integrate image, audio, and video embeddings to enhance its performance.

PyTorch Forecasting is a PyTorch-based package for time series forecasting with state-of-the-art network architectures. It offers a high-level API for training networks on pandas data frames and utilizes PyTorch Lightning for scalable training on GPUs and CPUs. The package aims to simplify time series forecasting with neural networks by providing a flexible API for professionals and default settings for beginners. It includes a timeseries dataset class, base model class, multiple neural network architectures, multi-horizon timeseries metrics, and hyperparameter tuning with optuna. PyTorch Forecasting is built on pytorch-lightning for easy training on various hardware configurations.

The IBM Analog Hardware Acceleration Kit is an open-source Python toolkit for exploring and using the capabilities of in-memory computing devices in the context of artificial intelligence. It consists of two main components: Pytorch integration and Analog devices simulator. The Pytorch integration provides a series of primitives and features that allow using the toolkit within PyTorch, including analog neural network modules, analog training using torch training workflow, and analog inference using torch inference workflow. The Analog devices simulator is a high-performant (CUDA-capable) C++ simulator that allows for simulating a wide range of analog devices and crossbar configurations by using abstract functional models of material characteristics with adjustable parameters. Along with the two main components, the toolkit includes other functionalities such as a library of device presets, a module for executing high-level use cases, a utility to automatically convert a downloaded model to its equivalent Analog model, and integration with the AIHW Composer platform. The toolkit is currently in beta and under active development, and users are advised to be mindful of potential issues and keep an eye for improvements, new features, and bug fixes in upcoming versions.

Only Train Once (OTO) is an automatic, architecture-agnostic DNN training and compression framework that allows users to train a general DNN from scratch or a pretrained checkpoint to achieve high performance and slimmer architecture simultaneously in a one-shot manner without fine-tuning. The framework includes features for automatic structured pruning and erasing operators, as well as hybrid structured sparse optimizers for efficient model compression. OTO provides tools for pruning zero-invariant group partitioning, constructing pruned models, and visualizing pruning and erasing dependency graphs. It supports the HESSO optimizer and offers a sanity check for compliance testing on various DNNs. The repository also includes publications, installation instructions, quick start guides, and a roadmap for future enhancements and collaborations.

NanoFlow is a throughput-oriented high-performance serving framework for Large Language Models (LLMs) that consistently delivers superior throughput compared to other frameworks by utilizing key techniques such as intra-device parallelism, asynchronous CPU scheduling, and SSD offloading. The framework proposes nano-batching to schedule compute-, memory-, and network-bound operations for simultaneous execution, leading to increased resource utilization. NanoFlow also adopts an asynchronous control flow to optimize CPU overhead and eagerly offloads KV-Cache to SSDs for multi-round conversations. The open-source codebase integrates state-of-the-art kernel libraries and provides necessary scripts for environment setup and experiment reproduction.

Llumnix is a cross-instance request scheduling layer built on top of LLM inference engines such as vLLM, providing optimized multi-instance serving performance with low latency, reduced time-to-first-token (TTFT) and queuing delays, reduced time-between-tokens (TBT) and preemption stalls, and high throughput. It achieves this through dynamic, fine-grained, KV-cache-aware scheduling, continuous rescheduling across instances, KV cache migration mechanism, and seamless integration with existing multi-instance deployment platforms. Llumnix is easy to use, fault-tolerant, elastic, and extensible to more inference engines and scheduling policies.

The AiTLAS toolbox (Artificial Intelligence Toolbox for Earth Observation) includes state-of-the-art machine learning methods for exploratory and predictive analysis of satellite imagery as well as a repository of AI-ready Earth Observation (EO) datasets. It can be easily applied for a variety of Earth Observation tasks, such as land use and cover classification, crop type prediction, localization of specific objects (semantic segmentation), etc. The main goal of AiTLAS is to facilitate better usability and adoption of novel AI methods (and models) by EO experts, while offering easy access and standardized format of EO datasets to AI experts which allows benchmarking of various existing and novel AI methods tailored for EO data.

Graph of Thoughts (GoT) is an official implementation framework designed to solve complex problems by modeling them as a Graph of Operations (GoO) executed with a Large Language Model (LLM) engine. It offers flexibility to implement various approaches like CoT or ToT, allowing users to solve problems using the new GoT approach. The framework includes setup guides, quick start examples, documentation, and examples for users to understand and utilize the tool effectively.

This repository contains the code and data for the paper 'Vision Language Models Are Blind'. It explores the limitations of large language models with vision capabilities (VLMs) in performing basic visual tasks that are easy for humans. The repository presents benchmark results showcasing the poor performance of state-of-the-art VLMs on tasks like counting line intersections, identifying circles, letters, and shapes, and following color-coded paths. The research highlights the challenges faced by VLMs in understanding visual information accurately, drawing parallels to myopia and blindness in human vision.

Long-Context-Attention (YunChang) is a unified sequence parallel approach that combines the strengths of DeepSpeed-Ulysses-Attention and Ring-Attention to provide a versatile and high-performance solution for long context LLM model training and inference. It addresses the limitations of both methods by offering no limitation on the number of heads, compatibility with advanced parallel strategies, and enhanced performance benchmarks. The tool is verified in Megatron-LM and offers best practices for 4D parallelism, making it suitable for various attention mechanisms and parallel computing advancements.

OpenPromptInjection is an open-source toolkit for attacks and defenses in LLM-integrated applications, enabling easy implementation, evaluation, and extension of attacks, defenses, and LLMs. It supports various attack and defense strategies, including prompt injection, paraphrasing, retokenization, data prompt isolation, instructional prevention, sandwich prevention, perplexity-based detection, LLM-based detection, response-based detection, and know-answer detection. Users can create models, tasks, and apps to evaluate different scenarios. The toolkit currently supports PaLM2 and provides a demo for querying models with prompts. Users can also evaluate ASV for different scenarios by injecting tasks and querying models with attacked data prompts.

AITom is an open-source platform for AI-driven cellular electron cryo-tomography analysis. It is developed to process large amounts of Cryo-ET data, reconstruct, detect, classify, recover, and spatially model different cellular components using state-of-the-art machine learning approaches. The platform aims to automate cellular structure discovery and provide new insights into molecular biology and medical applications.

ReaLHF is a distributed system designed for efficient RLHF training with Large Language Models (LLMs). It introduces a novel approach called parameter reallocation to dynamically redistribute LLM parameters across the cluster, optimizing allocations and parallelism for each computation workload. ReaL minimizes redundant communication while maximizing GPU utilization, achieving significantly higher Proximal Policy Optimization (PPO) training throughput compared to other systems. It supports large-scale training with various parallelism strategies and enables memory-efficient training with parameter and optimizer offloading. The system seamlessly integrates with HuggingFace checkpoints and inference frameworks, allowing for easy launching of local or distributed experiments. ReaLHF offers flexibility through versatile configuration customization and supports various RLHF algorithms, including DPO, PPO, RAFT, and more, while allowing the addition of custom algorithms for high efficiency.

BIG-Bench Mistake is a dataset of chain-of-thought (CoT) outputs annotated with the location of the first logical mistake. It was released as part of a research paper focusing on benchmarking LLMs in terms of their mistake-finding ability. The dataset includes CoT traces for tasks like Word Sorting, Tracking Shuffled Objects, Logical Deduction, Multistep Arithmetic, and Dyck Languages. Human annotators were recruited to identify mistake steps in these tasks, with automated annotation for Dyck Languages. Each JSONL file contains input questions, steps in the chain of thoughts, model's answer, correct answer, and the index of the first logical mistake.

This repository is an awesome list dedicated to resources for using Large Language Models (LLMs) to generate JSON or other structured outputs. It includes terminology explanations, hosted and local models, Python libraries, blog articles, videos, Jupyter notebooks, and leaderboards related to LLMs and JSON generation. The repository covers various aspects such as function calling, JSON mode, guided generation, and tool usage with different providers and models.

MathCoder is a repository focused on enhancing mathematical reasoning by fine-tuning open-source language models to use code for modeling and deriving math equations. It introduces MathCodeInstruct dataset with solutions interleaving natural language, code, and execution results. The repository provides MathCoder models capable of generating code-based solutions for challenging math problems, achieving state-of-the-art scores on MATH and GSM8K datasets. It offers tools for model deployment, inference, and evaluation, along with a citation for referencing the work.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.

This repository contains the code for HOLD, a method that jointly reconstructs hands and objects from monocular videos without assuming a pre-scanned object template. It can reconstruct 3D geometries of novel objects and hands, enabling template-free bimanual hand-object reconstruction, textureless object interaction with hands, and multiple objects interaction with hands. The repository provides instructions to download in-the-wild videos from HOLD, preprocess and train on custom videos, a volumetric rendering framework, a generalized codebase for single and two hand interaction with objects, a viewer to interact with predictions, and code to evaluate and compare with HOLD in HO3D. The repository also includes documentation for setup, training, evaluation, visualization, preprocessing custom sequences, and using HOLD on ARCTIC.

vLLM is a fast and easy-to-use library for LLM inference and serving. It is designed to be efficient, flexible, and easy to use. vLLM can be used to serve a variety of LLM models, including Hugging Face models. It supports a variety of decoding algorithms, including parallel sampling, beam search, and more. vLLM also supports tensor parallelism for distributed inference and streaming outputs. It is open-source and available on GitHub.

The Qianfan SDK provides best practices for large model toolchains, allowing AI workflows and AI-native applications to access the Qianfan large model platform elegantly and conveniently. The core capabilities of the SDK include three parts: large model reasoning, large model training, and general and extension: * `Large model reasoning`: Implements interface encapsulation for reasoning of Yuyan (ERNIE-Bot) series, open source large models, etc., supporting dialogue, completion, Embedding, etc. * `Large model training`: Based on platform capabilities, it supports end-to-end large model training process, including training data, fine-tuning/pre-training, and model services. * `General and extension`: General capabilities include common AI development tools such as Prompt/Debug/Client. The extension capability is based on the characteristics of Qianfan to adapt to common middleware frameworks.

Dstack is an open-source orchestration engine for running AI workloads in any cloud. It supports a wide range of cloud providers (such as AWS, GCP, Azure, Lambda, TensorDock, Vast.ai, CUDO, RunPod, etc.) as well as on-premises infrastructure. With Dstack, you can easily set up and manage dev environments, tasks, services, and pools for your AI workloads.

**RVC_CLI: Retrieval-based Voice Conversion Command Line Interface** This command-line interface (CLI) provides a comprehensive set of tools for voice conversion, enabling you to modify the pitch, timbre, and other characteristics of audio recordings. It leverages advanced machine learning models to achieve realistic and high-quality voice conversions. **Key Features:** * **Inference:** Convert the pitch and timbre of audio in real-time or process audio files in batch mode. * **TTS Inference:** Synthesize speech from text using a variety of voices and apply voice conversion techniques. * **Training:** Train custom voice conversion models to meet specific requirements. * **Model Management:** Extract, blend, and analyze models to fine-tune and optimize performance. * **Audio Analysis:** Inspect audio files to gain insights into their characteristics. * **API:** Integrate the CLI's functionality into your own applications or workflows. **Applications:** The RVC_CLI finds applications in various domains, including: * **Music Production:** Create unique vocal effects, harmonies, and backing vocals. * **Voiceovers:** Generate voiceovers with different accents, emotions, and styles. * **Audio Editing:** Enhance or modify audio recordings for podcasts, audiobooks, and other content. * **Research and Development:** Explore and advance the field of voice conversion technology. **For Jobs:** * Audio Engineer * Music Producer * Voiceover Artist * Audio Editor * Machine Learning Engineer **AI Keywords:** * Voice Conversion * Pitch Shifting * Timbre Modification * Machine Learning * Audio Processing **For Tasks:** * Convert Pitch * Change Timbre * Synthesize Speech * Train Model * Analyze Audio

llm-finetuning is a repository that provides a serverless twist to the popular axolotl fine-tuning library using Modal's serverless infrastructure. It allows users to quickly fine-tune any LLM model with state-of-the-art optimizations like Deepspeed ZeRO, LoRA adapters, Flash attention, and Gradient checkpointing. The repository simplifies the fine-tuning process by not exposing all CLI arguments, instead allowing users to specify options in a config file. It supports efficient training and scaling across multiple GPUs, making it suitable for production-ready fine-tuning jobs.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.

Generative AI models have shown tremendous usefulness in increasing accessibility and automation of a wide range of tasks. This repository contains the `biochatter` Python package, a generic backend library for the connection of biomedical applications to conversational AI. It aims to provide a common framework for deploying, testing, and evaluating diverse models and auxiliary technologies in the biomedical domain. BioChatter is part of the BioCypher ecosystem, connecting natively to BioCypher knowledge graphs.

ADMET-AI is a platform for ADMET prediction using Chemprop-RDKit models trained on ADMET datasets from the Therapeutics Data Commons. It offers command line, Python API, and web server interfaces for making ADMET predictions on new molecules. The platform can be easily installed using pip and supports GPU acceleration. It also provides options for processing TDC data, plotting results, and hosting a web server. ADMET-AI is a machine learning platform for evaluating large-scale chemical libraries.

AI-Drug-Discovery-Design is a repository focused on Artificial Intelligence-assisted Drug Discovery and Design. It explores the use of AI technology to accelerate and optimize the drug development process. The advantages of AI in drug design include speeding up research cycles, improving accuracy through data-driven models, reducing costs by minimizing experimental redundancies, and enabling personalized drug design for specific patients or disease characteristics.

Grand Challenge is a platform that provides access to large amounts of annotated training data, objective comparisons of state-of-the-art machine learning solutions, and clinical validation using real-world data. It assists researchers, data scientists, and clinicians in collaborating to develop robust machine learning solutions to problems in biomedical imaging.

This tool is designed to detect and classify Alzheimer's Disease using Deep Learning and Machine Learning algorithms on an early basis, which is further optimized using the Crow Search Algorithm (CSA). Alzheimer's is a fatal disease, and early detection is crucial for patients to predetermine their condition and prevent its progression. By analyzing MRI scanned images using Artificial Intelligence technology, this tool can classify patients who may or may not develop AD in the future. The CSA algorithm, combined with ML algorithms, has proven to be the most effective approach for this purpose.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

FuseMedML is a Python framework designed to accelerate machine learning-based discovery in the medical field by promoting code reuse. It provides a flexible design concept where data is stored in a nested dictionary, allowing easy handling of multi-modality information. The framework includes components for creating custom models, loss functions, metrics, and data processing operators. Additionally, FuseMedML offers 'batteries included' key components such as fuse.data for data processing, fuse.eval for model evaluation, and fuse.dl for reusable deep learning components. It supports PyTorch and PyTorch Lightning libraries and encourages the creation of domain extensions for specific medical domains.