ADMET-AI is a platform for ADMET prediction using Chemprop-RDKit models trained on ADMET datasets from the Therapeutics Data Commons. It offers command line, Python API, and web server interfaces for making ADMET predictions on new molecules. The platform can be easily installed using pip and supports GPU acceleration. It also provides options for processing TDC data, plotting results, and hosting a web server. ADMET-AI is a machine learning platform for evaluating large-scale chemical libraries.

HugeSCM is a cloud-based version control system designed to address R&D repository size issues. It effectively manages large repositories and individual large files by separating data storage and utilizing advanced algorithms and data structures. It aims for optimal performance in handling version control operations of large-scale repositories, making it suitable for single large library R&D, AI model development, and game or driver development.

Hugging Face AI Sheets is an open-source tool for building, enriching, and transforming datasets using AI models with no code. It can be deployed locally or on the Hub, providing access to thousands of open models. Users can easily generate datasets, run data generation scripts, and customize inference endpoints for text generation. The tool supports custom LLMs and offers advanced configuration options for authentication, inference, and miscellaneous settings. With AI Sheets, users can leverage the power of AI models without writing any code, making dataset management and transformation efficient and accessible.

WARC-GPT is an experimental retrieval augmented generation pipeline for web archive collections. It allows users to interact with WARC files, extract text, generate text embeddings, visualize embeddings, and interact with a web UI and API. The tool is highly customizable, supporting various LLMs, providers, and embedding models. Users can configure the application using environment variables, ingest WARC files, start the server, and interact with the web UI and API to search for content and generate text completions. WARC-GPT is designed for exploration and experimentation in exploring web archives using AI.

QANTA is a system and dataset for question answering tasks. It provides a script to download datasets, preprocesses questions, and matches them with Wikipedia pages. The system includes various datasets, training, dev, and test data in JSON and SQLite formats. Dependencies include Python 3.6, `click`, and NLTK models. Elastic Search 5.6 is needed for the Guesser component. Configuration is managed through environment variables and YAML files. QANTA supports multiple guesser implementations that can be enabled/disabled. Running QANTA involves using `cli.py` and Luigi pipelines. The system accesses raw Wikipedia dumps for data processing. The QANTA ID numbering scheme categorizes datasets based on events and competitions.

LLM-Subtrans is an open source subtitle translator that utilizes LLMs as a translation service. It supports translating subtitles between any language pairs supported by the language model. The application offers multiple subtitle formats support through a pluggable system, including .srt, .ssa/.ass, and .vtt files. Users can choose to use the packaged release for easy usage or install from source for more control over the setup. The tool requires an active internet connection as subtitles are sent to translation service providers' servers for translation.

2P-Kt is a Kotlin-based and multi-platform reboot of tuProlog (2P), a multi-paradigm logic programming framework written in Java. It consists of an open ecosystem for Symbolic Artificial Intelligence (AI) with modules supporting logic terms, unification, indexing, resolution of logic queries, probabilistic logic programming, binary decision diagrams, OR-concurrent resolution, DSL for logic programming, parsing modules, serialisation modules, command-line interface, and graphical user interface. The tool is designed to support knowledge representation and automatic reasoning through logic programming in an extensible and flexible way, encouraging extensions towards other symbolic AI systems than Prolog. It is a pure, multi-platform Kotlin project supporting JVM, JS, Android, and Native platforms, with a lightweight library leveraging the Kotlin common library.

AI Town is a virtual town where AI characters live, chat, and socialize. This project provides a deployable starter kit for building and customizing your own version of AI Town. It features a game engine, database, vector search, auth, text model, deployment, pixel art generation, background music generation, and local inference. You can customize your own simulation by creating characters and stories, updating spritesheets, changing the background, and modifying the background music.

Langroid-examples is a repository containing examples of using the Langroid Multi-Agent Programming framework to build LLM applications. It provides a collection of scripts and instructions for setting up the environment, working with local LLMs, using OpenAI LLMs, and running various examples. The repository also includes optional setup instructions for integrating with Qdrant, Redis, Momento, GitHub, and Google Custom Search API. Users can explore different scenarios and functionalities of Langroid through the provided examples and documentation.

This repository showcases how to build a simple LLM-based chatbot for answering questions based on documents using retrieval augmented generation (RAG) technique. It also provides guidance on deploying the chatbot using Podman or on the OpenShift Container Platform. The workshop associated with this repository introduces participants to LLMs & RAG concepts and demonstrates how to customize the chatbot for specific purposes. The software stack relies on open-source tools like streamlit, LlamaIndex, and local open LLMs via Ollama, making it accessible for GPU-constrained environments.

GPT-Subtrans is an open-source subtitle translator that utilizes large language models (LLMs) as translation services. It supports translation between any language pairs that the language model supports. Note that GPT-Subtrans requires an active internet connection, as subtitles are sent to the provider's servers for translation, and their privacy policy applies.

The `unstructured` library provides open-source components for ingesting and pre-processing images and text documents, such as PDFs, HTML, Word docs, and many more. The use cases of `unstructured` revolve around streamlining and optimizing the data processing workflow for LLMs. `unstructured` modular functions and connectors form a cohesive system that simplifies data ingestion and pre-processing, making it adaptable to different platforms and efficient in transforming unstructured data into structured outputs.

REINVENT is a molecular design tool for de novo design, scaffold hopping, R-group replacement, linker design, molecule optimization, and other small molecule design tasks. It uses a Reinforcement Learning (RL) algorithm to generate optimized molecules compliant with a user-defined property profile defined as a multi-component score. Transfer Learning (TL) can be used to create or pre-train a model that generates molecules closer to a set of input molecules.

LM Studio Python SDK provides a convenient API for interacting with LM Studio instance, including text completion and chat response functionalities. The SDK allows users to manage websocket connections and chat history easily. It also offers tools for code consistency checks, automated testing, and expanding the API.

J.A.I.son is a Python project designed for generating responses using various components and applications. It requires specific plugins like STT, T2T, TTSG, and TTSC to function properly. Users can customize responses, voice, and configurations. The project provides a Discord bot, Twitch events and chat integration, and VTube Studio Animation Hotkeyer. It also offers features for managing conversation history, training AI models, and monitoring conversations.

PolyMind is a multimodal, function calling powered LLM webui designed for various tasks such as internet searching, image generation, port scanning, Wolfram Alpha integration, Python interpretation, and semantic search. It offers a plugin system for adding extra functions and supports different models and endpoints. The tool allows users to interact via function calling and provides features like image input, image generation, and text file search. The application's configuration is stored in a `config.json` file with options for backend selection, compatibility mode, IP address settings, API key, and enabled features.

ADMET-AI is a platform for ADMET prediction using Chemprop-RDKit models trained on ADMET datasets from the Therapeutics Data Commons. It offers command line, Python API, and web server interfaces for making ADMET predictions on new molecules. The platform can be easily installed using pip and supports GPU acceleration. It also provides options for processing TDC data, plotting results, and hosting a web server. ADMET-AI is a machine learning platform for evaluating large-scale chemical libraries.

Biomni is a general-purpose biomedical AI agent designed to autonomously execute a wide range of research tasks across diverse biomedical subfields. By integrating cutting-edge large language model (LLM) reasoning with retrieval-augmented planning and code-based execution, Biomni helps scientists dramatically enhance research productivity and generate testable hypotheses.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.

Generative AI models have shown tremendous usefulness in increasing accessibility and automation of a wide range of tasks. This repository contains the `biochatter` Python package, a generic backend library for the connection of biomedical applications to conversational AI. It aims to provide a common framework for deploying, testing, and evaluating diverse models and auxiliary technologies in the biomedical domain. BioChatter is part of the BioCypher ecosystem, connecting natively to BioCypher knowledge graphs.

ADMET-AI is a platform for ADMET prediction using Chemprop-RDKit models trained on ADMET datasets from the Therapeutics Data Commons. It offers command line, Python API, and web server interfaces for making ADMET predictions on new molecules. The platform can be easily installed using pip and supports GPU acceleration. It also provides options for processing TDC data, plotting results, and hosting a web server. ADMET-AI is a machine learning platform for evaluating large-scale chemical libraries.

AI-Drug-Discovery-Design is a repository focused on Artificial Intelligence-assisted Drug Discovery and Design. It explores the use of AI technology to accelerate and optimize the drug development process. The advantages of AI in drug design include speeding up research cycles, improving accuracy through data-driven models, reducing costs by minimizing experimental redundancies, and enabling personalized drug design for specific patients or disease characteristics.

NVIDIA BioNeMo Framework is a collection of programming tools, libraries, and models for computational drug discovery. It accelerates building and adapting biomolecular AI models by providing domain-specific, optimized models and tooling for GPU-based computational resources. The framework offers comprehensive documentation and support for both community and enterprise users.

New AI Drug Discovery is a repository focused on the applications of Large Language Models (LLM) in drug discovery. It provides resources, tools, and examples for leveraging LLM technology in the pharmaceutical industry. The repository aims to showcase the potential of using AI-driven approaches to accelerate the drug discovery process, improve target identification, and optimize molecular design. By exploring the intersection of artificial intelligence and drug development, this repository offers insights into the latest advancements in computational biology and cheminformatics.

GROMACS Copilot is an agent designed to automate molecular dynamics simulations for proteins in water using GROMACS. It handles system setup, simulation execution, and result analysis automatically, providing outputs such as RMSD, RMSF, Rg, and H-bonds. Users can interact with the agent through prompts and API keys from DeepSeek and OpenAI. The tool aims to simplify the process of running MD simulations, allowing users to focus on other tasks while it handles the technical aspects of the simulations.

Biomni is a general-purpose biomedical AI agent designed to autonomously execute a wide range of research tasks across diverse biomedical subfields. By integrating cutting-edge large language model (LLM) reasoning with retrieval-augmented planning and code-based execution, Biomni helps scientists dramatically enhance research productivity and generate testable hypotheses.