
biochatter
Backend library for conversational AI in biomedicine
Stars: 135

Generative AI models have shown tremendous usefulness in increasing accessibility and automation of a wide range of tasks. This repository contains the `biochatter` Python package, a generic backend library for the connection of biomedical applications to conversational AI. It aims to provide a common framework for deploying, testing, and evaluating diverse models and auxiliary technologies in the biomedical domain. BioChatter is part of the BioCypher ecosystem, connecting natively to BioCypher knowledge graphs.
README:
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๐ค BioChatter is a community-driven Python library that connects biomedical applications to conversational AI, making it easy to leverage generative AI models in the biomedical domain.
- Generic backend for biomedical AI applications
- Seamless integration with multiple LLM providers
- Native connection to BioCypher knowledge graphs
- Extensive testing and evaluation framework
- Living benchmark of specific biomedical applications
-
BioChatter Light - Simple Python frontend (repo)
-
BioChatter Next - Advanced Next.js frontend (repo)
-
BioChatter Server - RESTful API server
๐ Learn more in our paper.
To use the package, install it from PyPI, for instance using pip (pip install biochatter
) or Poetry (poetry add biochatter
).
The package has some optional dependencies that can be installed using the
following extras (e.g. pip install biochatter[xinference]
):
-
xinference
: support for querying open-source LLMs through Xorbits Inference -
podcast
: support for podcast text-to-speech (for the free Google TTS; the paid OpenAI TTS can be used without this extra) -
streamlit
: support for streamlit UI functions (used in BioChatter Light)
Check out the documentation for examples, use cases,
and more information. Many common functionalities covered by BioChatter can be
seen in use in the BioChatter
Light code base.
We are very happy about contributions from the community, large and small! If you would like to contribute to BioCypher development, please refer to our contribution guidelines and the developer docs. :)
If you want to ask informal questions, talk about dev things, or just chat, please join our community at https://biocypher.zulipchat.com!
Imposter syndrome disclaimer: We want your help. No, really. There may be a little voice inside your head that is telling you that you're not ready, that you aren't skilled enough to contribute. We assure you that the little voice in your head is wrong. Most importantly, there are many valuable ways to contribute besides writing code.
This disclaimer was adapted from the Pooch project.
Check out this repository for more info on computational biology usage of large language models.
If you use BioChatter in your work, please cite our paper.
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