NoLabs is an open-source biolab that provides easy access to state-of-the-art models for bio research. It supports various tasks, including drug discovery, protein analysis, and small molecule design. NoLabs aims to accelerate bio research by making inference models accessible to everyone.

PatchWork is an open-source framework designed for automating development tasks using large language models. It enables users to automate workflows such as PR reviews, bug fixing, security patching, and more through a self-hosted CLI agent and preferred LLMs. The framework consists of reusable atomic actions called Steps, customizable LLM prompts known as Prompt Templates, and LLM-assisted automations called Patchflows. Users can run Patchflows locally in their CLI/IDE or as part of CI/CD pipelines. PatchWork offers predefined patchflows like AutoFix, PRReview, GenerateREADME, DependencyUpgrade, and ResolveIssue, with the flexibility to create custom patchflows. Prompt templates are used to pass queries to LLMs and can be customized. Contributions to new patchflows, steps, and the core framework are encouraged, with chat assistants available to aid in the process. The roadmap includes expanding the patchflow library, introducing a debugger and validation module, supporting large-scale code embeddings, parallelization, fine-tuned models, and an open-source GUI. PatchWork is licensed under AGPL-3.0 terms, while custom patchflows and steps can be shared using the Apache-2.0 licensed patchwork template repository.

The Linkedin API for Python allows users to programmatically search profiles, send messages, and find jobs using a regular Linkedin user account. It does not require 'official' API access, just a valid Linkedin account. However, it is important to note that this library is not officially supported by LinkedIn and using it may violate LinkedIn's Terms of Service. Users can authenticate using any Linkedin account credentials and access features like getting profiles, profile contact info, and connections. The library also provides commercial alternatives for extracting data, scraping public profiles, and accessing a full LinkedIn API. It is not endorsed or supported by LinkedIn and is intended for educational purposes and personal use only.

FiftyOne is an open-source tool designed for building high-quality datasets and computer vision models. It supercharges machine learning workflows by enabling users to visualize datasets, interpret models faster, and improve efficiency. With FiftyOne, users can explore scenarios, identify failure modes, visualize complex labels, evaluate models, find annotation mistakes, and much more. The tool aims to streamline the process of improving machine learning models by providing a comprehensive set of features for data analysis and model interpretation.

GraphRAG Local with Interactive UI is an adaptation of Microsoft's GraphRAG, tailored to support local models and featuring a comprehensive interactive user interface. It allows users to leverage local models for LLM and embeddings, visualize knowledge graphs in 2D or 3D, manage files, settings, and queries, and explore indexing outputs. The tool aims to be cost-effective by eliminating dependency on costly cloud-based models and offers flexible querying options for global, local, and direct chat queries.

Lantern is an open-source PostgreSQL database extension designed to store vector data, generate embeddings, and handle vector search operations efficiently. It introduces a new index type called 'lantern_hnsw' for vector columns, which speeds up 'ORDER BY ... LIMIT' queries. Lantern utilizes the state-of-the-art HNSW implementation called usearch. Users can easily install Lantern using Docker, Homebrew, or precompiled binaries. The tool supports various distance functions, index construction parameters, and operator classes for efficient querying. Lantern offers features like embedding generation, interoperability with pgvector, parallel index creation, and external index graph generation. It aims to provide superior performance metrics compared to other similar tools and has a roadmap for future enhancements such as cloud-hosted version, hardware-accelerated distance metrics, industry-specific application templates, and support for version control and A/B testing of embeddings.

Middleware is an open-source engineering management tool that helps engineering leaders measure and analyze team effectiveness using DORA metrics. It integrates with CI/CD tools, automates DORA metric collection and analysis, visualizes key performance indicators, provides customizable reports and dashboards, and integrates with project management platforms. Users can set up Middleware using Docker or manually, generate encryption keys, set up backend and web servers, and access the application to view DORA metrics. The tool calculates DORA metrics using GitHub data, including Deployment Frequency, Lead Time for Changes, Mean Time to Restore, and Change Failure Rate. Middleware aims to provide DORA metrics to users based on their Git data, simplifying the process of tracking software delivery performance and operational efficiency.

Air-light is a minimalist WordPress starter theme designed to be an ultra minimal starting point for a WordPress project. It is built to be very straightforward, backwards compatible, front-end developer friendly and modular by its structure. Air-light is free of weird "app-like" folder structures or odd syntaxes that nobody else uses. It loves WordPress as it was and as it is.

This repository contains a collection of tools that can be used with vastai. The tools are free to use, modify and distribute. If you find this useful and wish to donate your welcome to send your donations to the following wallets. BTC 15qkQSYXP2BvpqJkbj2qsNFb6nd7FyVcou XMR 897VkA8sG6gh7yvrKrtvWningikPteojfSgGff3JAUs3cu7jxPDjhiAZRdcQSYPE2VGFVHAdirHqRZEpZsWyPiNK6XPQKAg RVN RSgWs9Co8nQeyPqQAAqHkHhc5ykXyoMDUp USDT(ETH ERC20) 0xa5955cf9fe7af53bcaa1d2404e2b17a1f28aac4f Paypal PayPal.Me/cryptolabsZA

Holloway's Upscaler is a consolidation of various compiled open-source AI image/video upscaling products for a CLI-friendly image and video upscaling program. It provides low-cost AI upscaling software that can run locally on a laptop, programmable for albums and videos, reliable for large video files, and works without GUI overheads. The repository supports hardware testing on various systems and provides important notes on GPU compatibility, video types, and image decoding bugs. Dependencies include ffmpeg and ffprobe for video processing. The user manual covers installation, setup pathing, calling for help, upscaling images and videos, and contributing back to the project. Benchmarks are provided for performance evaluation on different hardware setups.

NekoImageGallery is an online AI image search engine that utilizes the Clip model and Qdrant vector database. It supports keyword search and similar image search. The tool generates 768-dimensional vectors for each image using the Clip model, supports OCR text search using PaddleOCR, and efficiently searches vectors using the Qdrant vector database. Users can deploy the tool locally or via Docker, with options for metadata storage using Qdrant database or local file storage. The tool provides API documentation through FastAPI's built-in Swagger UI and can be used for tasks like image search, text extraction, and vector search.

Protofy is a full-stack, batteries-included low-code enabled web/app and IoT system with an API system and real-time messaging. It is based on Protofy (protoflow + visualui + protolib + protodevices) + Expo + Next.js + Tamagui + Solito + Express + Aedes + Redbird + Many other amazing packages. Protofy can be used to fast prototype Apps, webs, IoT systems, automations, or APIs. It is a ultra-extensible CMS with supercharged capabilities, mobile support, and IoT support (esp32 thanks to esphome).

ProX is a lm-based data refinement framework that automates the process of cleaning and improving data used in pre-training large language models. It offers better performance, domain flexibility, efficiency, and cost-effectiveness compared to traditional methods. The framework has been shown to improve model performance by over 2% and boost accuracy by up to 20% in tasks like math. ProX is designed to refine data at scale without the need for manual adjustments, making it a valuable tool for data preprocessing in natural language processing tasks.

Neural is a Vim and Neovim plugin that integrates various machine learning tools to assist users in writing code, generating text, and explaining code or paragraphs. It supports multiple machine learning models, focuses on privacy, and is compatible with Vim 8.0+ and Neovim 0.8+. Users can easily configure Neural to interact with third-party machine learning tools, such as OpenAI, to enhance code generation and completion. The plugin also provides commands like `:NeuralExplain` to explain code or text and `:NeuralStop` to stop Neural from working. Neural is maintained by the Dense Analysis team and comes with a disclaimer about sending input data to third-party servers for machine learning queries.

r2ai is a tool designed to run a language model locally without internet access. It can be used to entertain users or assist in answering questions related to radare2 or reverse engineering. The tool allows users to prompt the language model, index large codebases, slurp file contents, embed the output of an r2 command, define different system-level assistant roles, set environment variables, and more. It is accessible as an r2lang-python plugin and can be scripted from various languages. Users can use different models, adjust query templates dynamically, load multiple models, and make them communicate with each other.

GPT-Engineer is a tool that allows you to specify a software in natural language, sit back and watch as an AI writes and executes the code, and ask the AI to implement improvements.

NoLabs is an open-source biolab that provides easy access to state-of-the-art models for bio research. It supports various tasks, including drug discovery, protein analysis, and small molecule design. NoLabs aims to accelerate bio research by making inference models accessible to everyone.

NoLabs is an open-source biolab that provides easy access to state-of-the-art models for bio research. It supports various tasks, including drug discovery, protein analysis, and small molecule design. NoLabs aims to accelerate bio research by making inference models accessible to everyone.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

The Ersilia Model Hub is a unified platform of pre-trained AI/ML models dedicated to infectious and neglected disease research. It offers an open-source, low-code solution that provides seamless access to AI/ML models for drug discovery. Models housed in the hub come from two sources: published models from literature (with due third-party acknowledgment) and custom models developed by the Ersilia team or contributors.

OntoGPT is a Python package for extracting structured information from text using large language models, instruction prompts, and ontology-based grounding. It provides a command line interface and a minimal web app for easy usage. The tool has been evaluated on test data and is used in related projects like TALISMAN for gene set analysis. OntoGPT enables users to extract information from text by specifying relevant terms and provides the extracted objects as output.

BIA `bob` is a Jupyter-based assistant for interacting with data using large language models to generate Python code. It can utilize OpenAI's chatGPT, Google's Gemini, Helmholtz' blablador, and Ollama. Users need respective accounts to access these services. Bob can assist in code generation, bug fixing, code documentation, GPU-acceleration, and offers a no-code custom Jupyter Kernel. It provides example notebooks for various tasks like bio-image analysis, model selection, and bug fixing. Installation is recommended via conda/mamba environment. Custom endpoints like blablador and ollama can be used. Google Cloud AI API integration is also supported. The tool is extensible for Python libraries to enhance Bob's functionality.

Scientific Large Language Models (Sci-LLMs) is a repository that collects papers on scientific large language models, focusing on biology and chemistry domains. It includes textual, molecular, protein, and genomic languages, as well as multimodal language. The repository covers various large language models for tasks such as molecule property prediction, interaction prediction, protein sequence representation, protein sequence generation/design, DNA-protein interaction prediction, and RNA prediction. It also provides datasets and benchmarks for evaluating these models. The repository aims to facilitate research and development in the field of scientific language modeling.

Polaris establishes a novel, industry‑certified standard to foster the development of impactful methods in AI-based drug discovery. This library is a Python client to interact with the Polaris Hub. It allows you to download Polaris datasets and benchmarks, evaluate a custom method against a Polaris benchmark, and create and upload new datasets and benchmarks.

The 'awesome-AI4MolConformation-MD' repository focuses on protein conformations and molecular dynamics using generative artificial intelligence and deep learning. It provides resources, reviews, datasets, packages, and tools related to AI-driven molecular dynamics simulations. The repository covers a wide range of topics such as neural networks potentials, force fields, AI engines/frameworks, trajectory analysis, visualization tools, and various AI-based models for protein conformational sampling. It serves as a comprehensive guide for researchers and practitioners interested in leveraging AI for studying molecular structures and dynamics.