NoLabs is an open-source biolab that provides easy access to state-of-the-art models for bio research. It supports various tasks, including drug discovery, protein analysis, and small molecule design. NoLabs aims to accelerate bio research by making inference models accessible to everyone.

GitIngest is a tool that allows users to turn any Git repository into a prompt-friendly text ingest for LLMs. It provides easy code context by generating a text digest from a git repository URL or directory. The tool offers smart formatting for optimized output format for LLM prompts and provides statistics about file and directory structure, size of the extract, and token count. GitIngest can be used as a CLI tool on Linux and as a Python package for code integration. The tool is built using Tailwind CSS for frontend, FastAPI for backend framework, tiktoken for token estimation, and apianalytics.dev for simple analytics. Users can self-host GitIngest by building the Docker image and running the container. Contributions to the project are welcome, and the tool aims to be beginner-friendly for first-time contributors with a simple Python and HTML codebase.

PatchWork is an open-source framework designed for automating development tasks using large language models. It enables users to automate workflows such as PR reviews, bug fixing, security patching, and more through a self-hosted CLI agent and preferred LLMs. The framework consists of reusable atomic actions called Steps, customizable LLM prompts known as Prompt Templates, and LLM-assisted automations called Patchflows. Users can run Patchflows locally in their CLI/IDE or as part of CI/CD pipelines. PatchWork offers predefined patchflows like AutoFix, PRReview, GenerateREADME, DependencyUpgrade, and ResolveIssue, with the flexibility to create custom patchflows. Prompt templates are used to pass queries to LLMs and can be customized. Contributions to new patchflows, steps, and the core framework are encouraged, with chat assistants available to aid in the process. The roadmap includes expanding the patchflow library, introducing a debugger and validation module, supporting large-scale code embeddings, parallelization, fine-tuned models, and an open-source GUI. PatchWork is licensed under AGPL-3.0 terms, while custom patchflows and steps can be shared using the Apache-2.0 licensed patchwork template repository.

Easy-Translate is a script designed for translating large text files with a single command. It supports various models like M2M100, NLLB200, SeamlessM4T, LLaMA, and Bloom. The tool is beginner-friendly and offers seamless and customizable features for advanced users. It allows acceleration on CPU, multi-CPU, GPU, multi-GPU, and TPU, with support for different precisions and decoding strategies. Easy-Translate also provides an evaluation script for translations. Built on HuggingFace's Transformers and Accelerate library, it supports prompt usage and loading huge models efficiently.

Open Parse is a Python library for visually discerning document layouts and chunking them effectively. It is designed to fill the gap in open-source libraries for handling complex documents. Unlike text splitting, which converts a file to raw text and slices it up, Open Parse visually analyzes documents for superior LLM input. It also supports basic markdown for parsing headings, bold, and italics, and has high-precision table support, extracting tables into clean Markdown formats with accuracy that surpasses traditional tools. Open Parse is extensible, allowing users to easily implement their own post-processing steps. It is also intuitive, with great editor support and completion everywhere, making it easy to use and learn.

The Linkedin API for Python allows users to programmatically search profiles, send messages, and find jobs using a regular Linkedin user account. It does not require 'official' API access, just a valid Linkedin account. However, it is important to note that this library is not officially supported by LinkedIn and using it may violate LinkedIn's Terms of Service. Users can authenticate using any Linkedin account credentials and access features like getting profiles, profile contact info, and connections. The library also provides commercial alternatives for extracting data, scraping public profiles, and accessing a full LinkedIn API. It is not endorsed or supported by LinkedIn and is intended for educational purposes and personal use only.

GraphRAG Local with Interactive UI is an adaptation of Microsoft's GraphRAG, tailored to support local models and featuring a comprehensive interactive user interface. It allows users to leverage local models for LLM and embeddings, visualize knowledge graphs in 2D or 3D, manage files, settings, and queries, and explore indexing outputs. The tool aims to be cost-effective by eliminating dependency on costly cloud-based models and offers flexible querying options for global, local, and direct chat queries.

Middleware is an open-source engineering management tool that helps engineering leaders measure and analyze team effectiveness using DORA metrics. It integrates with CI/CD tools, automates DORA metric collection and analysis, visualizes key performance indicators, provides customizable reports and dashboards, and integrates with project management platforms. Users can set up Middleware using Docker or manually, generate encryption keys, set up backend and web servers, and access the application to view DORA metrics. The tool calculates DORA metrics using GitHub data, including Deployment Frequency, Lead Time for Changes, Mean Time to Restore, and Change Failure Rate. Middleware aims to provide DORA metrics to users based on their Git data, simplifying the process of tracking software delivery performance and operational efficiency.

Air-light is a minimalist WordPress starter theme designed to be an ultra minimal starting point for a WordPress project. It is built to be very straightforward, backwards compatible, front-end developer friendly and modular by its structure. Air-light is free of weird "app-like" folder structures or odd syntaxes that nobody else uses. It loves WordPress as it was and as it is.

This repository is a sample chatbot using the Anthropic company's LLM Claude, one of the foundational models provided by Amazon Bedrock for generative AI. It allows users to have basic conversations with the chatbot, personalize it with their own instructions and external knowledge, and analyze usage for each user/bot on the administrator dashboard. The chatbot supports various languages, including English, Japanese, Korean, Chinese, French, German, and Spanish. Deployment is straightforward and can be done via the command line or by using AWS CDK. The architecture is built on AWS managed services, eliminating the need for infrastructure management and ensuring scalability, reliability, and security.

Holloway's Upscaler is a consolidation of various compiled open-source AI image/video upscaling products for a CLI-friendly image and video upscaling program. It provides low-cost AI upscaling software that can run locally on a laptop, programmable for albums and videos, reliable for large video files, and works without GUI overheads. The repository supports hardware testing on various systems and provides important notes on GPU compatibility, video types, and image decoding bugs. Dependencies include ffmpeg and ffprobe for video processing. The user manual covers installation, setup pathing, calling for help, upscaling images and videos, and contributing back to the project. Benchmarks are provided for performance evaluation on different hardware setups.

AnyParser provides an API to accurately extract unstructured data (e.g., PDFs, images, charts) into a structured format. Users can set up their API key, run synchronous and asynchronous extractions, and perform batch extraction. The tool is useful for extracting text, numbers, and symbols from various sources like PDFs and images. It offers flexibility in processing data and provides immediate results for synchronous extraction while allowing users to fetch results later for asynchronous and batch extraction. AnyParser is designed to simplify data extraction tasks and enhance data processing efficiency.

NekoImageGallery is an online AI image search engine that utilizes the Clip model and Qdrant vector database. It supports keyword search and similar image search. The tool generates 768-dimensional vectors for each image using the Clip model, supports OCR text search using PaddleOCR, and efficiently searches vectors using the Qdrant vector database. Users can deploy the tool locally or via Docker, with options for metadata storage using Qdrant database or local file storage. The tool provides API documentation through FastAPI's built-in Swagger UI and can be used for tasks like image search, text extraction, and vector search.

Protofy is a full-stack, batteries-included low-code enabled web/app and IoT system with an API system and real-time messaging. It is based on Protofy (protoflow + visualui + protolib + protodevices) + Expo + Next.js + Tamagui + Solito + Express + Aedes + Redbird + Many other amazing packages. Protofy can be used to fast prototype Apps, webs, IoT systems, automations, or APIs. It is a ultra-extensible CMS with supercharged capabilities, mobile support, and IoT support (esp32 thanks to esphome).

RAVE is a variational autoencoder for fast and high-quality neural audio synthesis. It can be used to generate new audio samples from a given dataset, or to modify the style of existing audio samples. RAVE is easy to use and can be trained on a variety of audio datasets. It is also computationally efficient, making it suitable for real-time applications.

NoLabs is an open-source biolab that provides easy access to state-of-the-art models for bio research. It supports various tasks, including drug discovery, protein analysis, and small molecule design. NoLabs aims to accelerate bio research by making inference models accessible to everyone.

NoLabs is an open-source biolab that provides easy access to state-of-the-art models for bio research. It supports various tasks, including drug discovery, protein analysis, and small molecule design. NoLabs aims to accelerate bio research by making inference models accessible to everyone.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

The Ersilia Model Hub is a unified platform of pre-trained AI/ML models dedicated to infectious and neglected disease research. It offers an open-source, low-code solution that provides seamless access to AI/ML models for drug discovery. Models housed in the hub come from two sources: published models from literature (with due third-party acknowledgment) and custom models developed by the Ersilia team or contributors.

OntoGPT is a Python package for extracting structured information from text using large language models, instruction prompts, and ontology-based grounding. It provides a command line interface and a minimal web app for easy usage. The tool has been evaluated on test data and is used in related projects like TALISMAN for gene set analysis. OntoGPT enables users to extract information from text by specifying relevant terms and provides the extracted objects as output.

BIA `bob` is a Jupyter-based assistant for interacting with data using large language models to generate Python code. It can utilize OpenAI's chatGPT, Google's Gemini, Helmholtz' blablador, and Ollama. Users need respective accounts to access these services. Bob can assist in code generation, bug fixing, code documentation, GPU-acceleration, and offers a no-code custom Jupyter Kernel. It provides example notebooks for various tasks like bio-image analysis, model selection, and bug fixing. Installation is recommended via conda/mamba environment. Custom endpoints like blablador and ollama can be used. Google Cloud AI API integration is also supported. The tool is extensible for Python libraries to enhance Bob's functionality.

Scientific Large Language Models (Sci-LLMs) is a repository that collects papers on scientific large language models, focusing on biology and chemistry domains. It includes textual, molecular, protein, and genomic languages, as well as multimodal language. The repository covers various large language models for tasks such as molecule property prediction, interaction prediction, protein sequence representation, protein sequence generation/design, DNA-protein interaction prediction, and RNA prediction. It also provides datasets and benchmarks for evaluating these models. The repository aims to facilitate research and development in the field of scientific language modeling.

Polaris establishes a novel, industry‑certified standard to foster the development of impactful methods in AI-based drug discovery. This library is a Python client to interact with the Polaris Hub. It allows you to download Polaris datasets and benchmarks, evaluate a custom method against a Polaris benchmark, and create and upload new datasets and benchmarks.

The 'awesome-AI4MolConformation-MD' repository focuses on protein conformations and molecular dynamics using generative artificial intelligence and deep learning. It provides resources, reviews, datasets, packages, and tools related to AI-driven molecular dynamics simulations. The repository covers a wide range of topics such as neural networks potentials, force fields, AI engines/frameworks, trajectory analysis, visualization tools, and various AI-based models for protein conformational sampling. It serves as a comprehensive guide for researchers and practitioners interested in leveraging AI for studying molecular structures and dynamics.