The Ersilia Model Hub is a unified platform of pre-trained AI/ML models dedicated to infectious and neglected disease research. It offers an open-source, low-code solution that provides seamless access to AI/ML models for drug discovery. Models housed in the hub come from two sources: published models from literature (with due third-party acknowledgment) and custom models developed by the Ersilia team or contributors.

Kaito is an operator that automates the AI/ML inference model deployment in a Kubernetes cluster. It manages large model files using container images, avoids tuning deployment parameters to fit GPU hardware by providing preset configurations, auto-provisions GPU nodes based on model requirements, and hosts large model images in the public Microsoft Container Registry (MCR) if the license allows. Using Kaito, the workflow of onboarding large AI inference models in Kubernetes is largely simplified.

Discover the journey of building a generative AI application using LangChain.js and Azure. This demo explores the development process from idea to production, using a RAG-based approach for a Q&A system based on YouTube video transcripts. The application allows to ask text-based questions about a YouTube video and uses the transcript of the video to generate responses. The code comes in two versions: local prototype using FAISS and Ollama with LLaMa3 model for completion and all-minilm-l6-v2 for embeddings, and Azure cloud version using Azure AI Search and GPT-4 Turbo model for completion and text-embedding-3-large for embeddings. Either version can be run as an API using the Azure Functions runtime.

This solution provides a low-code ReactJS application to prototype and vet business use cases for GenAI using Retrieval Augmented Generation (RAG). It includes a backend Flask application that uses LangChain to provide PDF data as embeddings to a text-gen model via Amazon Bedrock and a vector database with FAISS or Kendra Index. The solution utilizes Amazon Bedrock as the only cost-generating AWS service.

Agentok Studio is a visual tool built for AutoGen, a cutting-edge agent framework from Microsoft and various contributors. It offers intuitive visual tools to simplify the construction and management of complex agent-based workflows. Users can create workflows visually as graphs, chat with agents, and share flow templates. The tool is designed to streamline the development process for creators and developers working on next-generation Multi-Agent Applications.

iLLM-TSC is a framework that integrates reinforcement learning and large language models for traffic signal control policy improvement. It refines RL decisions based on real-world contexts and provides reasonable actions when RL agents make erroneous decisions. The framework includes cases where the large language model provides explanations and recommendations for RL agent actions, such as prioritizing emergency vehicles at intersections. Users can install and run the framework locally to train RL models and evaluate the combined RL+LLM approach.

The Codebase Context Specification (CCS) project aims to standardize embedding contextual information within codebases to enhance understanding for both AI and human developers. It introduces a convention similar to `.env` and `.editorconfig` files but focused on documenting code for both AI and humans. By providing structured contextual metadata, collaborative documentation guidelines, and standardized context files, developers can improve code comprehension, collaboration, and development efficiency. The project includes a linter for validating context files and provides guidelines for using the specification with AI assistants. Tooling recommendations suggest creating memory systems, IDE plugins, AI model integrations, and agents for context creation and utilization. Future directions include integration with existing documentation systems, dynamic context generation, and support for explicit context overriding.

FlowTestAI is the world’s first GenAI powered OpenSource Integrated Development Environment (IDE) designed for crafting, visualizing, and managing API-first workflows. It operates as a desktop app, interacting with the local file system, ensuring privacy and enabling collaboration via version control systems. The platform offers platform-specific binaries for macOS, with versions for Windows and Linux in development. It also features a CLI for running API workflows from the command line interface, facilitating automation and CI/CD processes.

AI Exploits is a repository that showcases practical attacks against AI/Machine Learning infrastructure, aiming to raise awareness about vulnerabilities in the AI/ML ecosystem. It contains exploits and scanning templates for responsibly disclosed vulnerabilities affecting machine learning tools, including Metasploit modules, Nuclei templates, and CSRF templates. Users can use the provided Docker image to easily run the modules and templates. The repository also provides guidelines for using Metasploit modules, Nuclei templates, and CSRF templates to exploit vulnerabilities in machine learning tools.

Vespa is a platform that performs operations such as selecting a subset of data in a large corpus, evaluating machine-learned models over the selected data, organizing and aggregating it, and returning it, typically in less than 100 milliseconds, all while the data corpus is continuously changing. It has been in development for many years and is used on a number of large internet services and apps which serve hundreds of thousands of queries from Vespa per second.

VectorVein is a no-code AI workflow software inspired by LangChain and langflow, aiming to combine the powerful capabilities of large language models and enable users to achieve intelligent and automated daily workflows through simple drag-and-drop actions. Users can create powerful workflows without the need for programming, automating all tasks with ease. The software allows users to define inputs, outputs, and processing methods to create customized workflow processes for various tasks such as translation, mind mapping, summarizing web articles, and automatic categorization of customer reviews.

Zep is an open-source platform for building and deploying large language model (LLM) applications. It provides a suite of tools and services that make it easy to integrate LLMs into your applications, including chat history memory, embedding, vector search, and data enrichment. Zep is designed to be scalable, reliable, and easy to use, making it a great choice for developers who want to build LLM-powered applications quickly and easily.

The Microsoft Health Intelligence Machine Learning Toolbox is a repository that provides low-level and high-level building blocks for Machine Learning / AI researchers and practitioners. It simplifies and streamlines work on deep learning models for healthcare and life sciences by offering tested components such as data loaders, pre-processing tools, deep learning models, and cloud integration utilities. The repository includes two Python packages, 'hi-ml-azure' for helper functions in AzureML, 'hi-ml' for ML components, and 'hi-ml-cpath' for models and workflows related to histopathology images.

J.A.I.son is a Python project designed for generating responses using various components and applications. It requires specific plugins like STT, T2T, TTSG, and TTSC to function properly. Users can customize responses, voice, and configurations. The project provides a Discord bot, Twitch events and chat integration, and VTube Studio Animation Hotkeyer. It also offers features for managing conversation history, training AI models, and monitoring conversations.

Pathway is a Python data processing framework for analytics and AI pipelines over data streams. It's the ideal solution for real-time processing use cases like streaming ETL or RAG pipelines for unstructured data. Pathway comes with an **easy-to-use Python API** , allowing you to seamlessly integrate your favorite Python ML libraries. Pathway code is versatile and robust: **you can use it in both development and production environments, handling both batch and streaming data effectively**. The same code can be used for local development, CI/CD tests, running batch jobs, handling stream replays, and processing data streams. Pathway is powered by a **scalable Rust engine** based on Differential Dataflow and performs incremental computation. Your Pathway code, despite being written in Python, is run by the Rust engine, enabling multithreading, multiprocessing, and distributed computations. All the pipeline is kept in memory and can be easily deployed with **Docker and Kubernetes**. You can install Pathway with pip: `pip install -U pathway` For any questions, you will find the community and team behind the project on Discord.

RevEng.AI IDA Pro Plugin is a tool that integrates with the RevEng.AI platform to provide various features such as uploading binaries for analysis, downloading analysis logs, renaming function names, generating AI summaries, synchronizing functions between local analysis and the platform, and configuring plugin settings. Users can upload files for analysis, synchronize function names, rename functions, generate block summaries, and explain function behavior using this plugin. The tool requires IDA Pro v8.0 or later with Python 3.9 and higher. It relies on the 'reait' package for functionality.

The Ersilia Model Hub is a unified platform of pre-trained AI/ML models dedicated to infectious and neglected disease research. It offers an open-source, low-code solution that provides seamless access to AI/ML models for drug discovery. Models housed in the hub come from two sources: published models from literature (with due third-party acknowledgment) and custom models developed by the Ersilia team or contributors.

NoLabs is an open-source biolab that provides easy access to state-of-the-art models for bio research. It supports various tasks, including drug discovery, protein analysis, and small molecule design. NoLabs aims to accelerate bio research by making inference models accessible to everyone.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

The Ersilia Model Hub is a unified platform of pre-trained AI/ML models dedicated to infectious and neglected disease research. It offers an open-source, low-code solution that provides seamless access to AI/ML models for drug discovery. Models housed in the hub come from two sources: published models from literature (with due third-party acknowledgment) and custom models developed by the Ersilia team or contributors.

OntoGPT is a Python package for extracting structured information from text using large language models, instruction prompts, and ontology-based grounding. It provides a command line interface and a minimal web app for easy usage. The tool has been evaluated on test data and is used in related projects like TALISMAN for gene set analysis. OntoGPT enables users to extract information from text by specifying relevant terms and provides the extracted objects as output.

BIA `bob` is a Jupyter-based assistant for interacting with data using large language models to generate Python code. It can utilize OpenAI's chatGPT, Google's Gemini, Helmholtz' blablador, and Ollama. Users need respective accounts to access these services. Bob can assist in code generation, bug fixing, code documentation, GPU-acceleration, and offers a no-code custom Jupyter Kernel. It provides example notebooks for various tasks like bio-image analysis, model selection, and bug fixing. Installation is recommended via conda/mamba environment. Custom endpoints like blablador and ollama can be used. Google Cloud AI API integration is also supported. The tool is extensible for Python libraries to enhance Bob's functionality.

Scientific Large Language Models (Sci-LLMs) is a repository that collects papers on scientific large language models, focusing on biology and chemistry domains. It includes textual, molecular, protein, and genomic languages, as well as multimodal language. The repository covers various large language models for tasks such as molecule property prediction, interaction prediction, protein sequence representation, protein sequence generation/design, DNA-protein interaction prediction, and RNA prediction. It also provides datasets and benchmarks for evaluating these models. The repository aims to facilitate research and development in the field of scientific language modeling.

Polaris establishes a novel, industry‑certified standard to foster the development of impactful methods in AI-based drug discovery. This library is a Python client to interact with the Polaris Hub. It allows you to download Polaris datasets and benchmarks, evaluate a custom method against a Polaris benchmark, and create and upload new datasets and benchmarks.

The 'awesome-AI4MolConformation-MD' repository focuses on protein conformations and molecular dynamics using generative artificial intelligence and deep learning. It provides resources, reviews, datasets, packages, and tools related to AI-driven molecular dynamics simulations. The repository covers a wide range of topics such as neural networks potentials, force fields, AI engines/frameworks, trajectory analysis, visualization tools, and various AI-based models for protein conformational sampling. It serves as a comprehensive guide for researchers and practitioners interested in leveraging AI for studying molecular structures and dynamics.