The Ersilia Model Hub is a unified platform of pre-trained AI/ML models dedicated to infectious and neglected disease research. It offers an open-source, low-code solution that provides seamless access to AI/ML models for drug discovery. Models housed in the hub come from two sources: published models from literature (with due third-party acknowledgment) and custom models developed by the Ersilia team or contributors.

Kaito is an operator that automates the AI/ML inference model deployment in a Kubernetes cluster. It manages large model files using container images, avoids tuning deployment parameters to fit GPU hardware by providing preset configurations, auto-provisions GPU nodes based on model requirements, and hosts large model images in the public Microsoft Container Registry (MCR) if the license allows. Using Kaito, the workflow of onboarding large AI inference models in Kubernetes is largely simplified.

Discover the journey of building a generative AI application using LangChain.js and Azure. This demo explores the development process from idea to production, using a RAG-based approach for a Q&A system based on YouTube video transcripts. The application allows to ask text-based questions about a YouTube video and uses the transcript of the video to generate responses. The code comes in two versions: local prototype using FAISS and Ollama with LLaMa3 model for completion and all-minilm-l6-v2 for embeddings, and Azure cloud version using Azure AI Search and GPT-4 Turbo model for completion and text-embedding-3-large for embeddings. Either version can be run as an API using the Azure Functions runtime.

Agentok Studio is a visual tool built for AutoGen, a cutting-edge agent framework from Microsoft and various contributors. It offers intuitive visual tools to simplify the construction and management of complex agent-based workflows. Users can create workflows visually as graphs, chat with agents, and share flow templates. The tool is designed to streamline the development process for creators and developers working on next-generation Multi-Agent Applications.

AI Exploits is a repository that showcases practical attacks against AI/Machine Learning infrastructure, aiming to raise awareness about vulnerabilities in the AI/ML ecosystem. It contains exploits and scanning templates for responsibly disclosed vulnerabilities affecting machine learning tools, including Metasploit modules, Nuclei templates, and CSRF templates. Users can use the provided Docker image to easily run the modules and templates. The repository also provides guidelines for using Metasploit modules, Nuclei templates, and CSRF templates to exploit vulnerabilities in machine learning tools.

RevEng.AI IDA Pro Plugin is a tool that integrates with the RevEng.AI platform to provide various features such as uploading binaries for analysis, downloading analysis logs, renaming function names, generating AI summaries, synchronizing functions between local analysis and the platform, and configuring plugin settings. Users can upload files for analysis, synchronize function names, rename functions, generate block summaries, and explain function behavior using this plugin. The tool requires IDA Pro v8.0 or later with Python 3.9 and higher. It relies on the 'reait' package for functionality.

J.A.I.son is a Python project designed for generating responses using various components and applications. It requires specific plugins like STT, T2T, TTSG, and TTSC to function properly. Users can customize responses, voice, and configurations. The project provides a Discord bot, Twitch events and chat integration, and VTube Studio Animation Hotkeyer. It also offers features for managing conversation history, training AI models, and monitoring conversations.

DLIO is an I/O benchmark tool designed for Deep Learning applications. It emulates modern deep learning applications using Benchmark Runner, Data Generator, Format Handler, and I/O Profiler modules. Users can configure various I/O patterns, data loaders, data formats, datasets, and parameters. The tool is aimed at emulating the I/O behavior of deep learning applications and provides a modular design for flexibility and customization.

The Microsoft Health Intelligence Machine Learning Toolbox is a repository that provides low-level and high-level building blocks for Machine Learning / AI researchers and practitioners. It simplifies and streamlines work on deep learning models for healthcare and life sciences by offering tested components such as data loaders, pre-processing tools, deep learning models, and cloud integration utilities. The repository includes two Python packages, 'hi-ml-azure' for helper functions in AzureML, 'hi-ml' for ML components, and 'hi-ml-cpath' for models and workflows related to histopathology images.

Council is an open-source platform designed for the rapid development and deployment of customized generative AI applications using teams of agents. It extends the LLM tool ecosystem by providing advanced control flow and scalable oversight for AI agents. Users can create sophisticated agents with predictable behavior by leveraging Council's powerful approach to control flow using Controllers, Filters, Evaluators, and Budgets. The framework allows for automated routing between agents, comparing, evaluating, and selecting the best results for a task. Council aims to facilitate packaging and deploying agents at scale on multiple platforms while enabling enterprise-grade monitoring and quality control.

Modus is an open-source, serverless framework for building APIs powered by WebAssembly. It simplifies integrating AI models, data, and business logic with sandboxed execution. Modus extracts metadata, compiles code with optimizations, caches compiled modules, prepares invocation plans, generates API schema, and activates endpoints. Users query the endpoint, and Modus loads compiled code into a sandboxed environment, runs code securely, queries data and AI models, and responds via API. It provides a production-ready scalable endpoint for AI-enabled apps, optimized for sub-second response times. Modus supports programming languages like AssemblyScript and Go, and can be hosted on Hypermode or any platform. Developed by Hypermode as an open-source project, Modus welcomes external contributions.

LangSim is a tool developed to address the challenge of using simulation tools in computational chemistry and materials science, which typically require cryptic input files or programming experience. The tool provides a Large Language Model (LLM) extension with agents to couple the LLM to scientific simulation codes and calculate physical properties from a natural language interface. It aims to simplify the process of interacting with simulation tools by enabling users to query the large language model directly from a Python environment or a web-based interface.

CoLLM is a novel method that integrates collaborative information into Large Language Models (LLMs) for recommendation. It converts recommendation data into language prompts, encodes them with both textual and collaborative information, and uses a two-step tuning method to train the model. The method incorporates user/item ID fields in prompts and employs a conventional collaborative model to generate user/item representations. CoLLM is built upon MiniGPT-4 and utilizes pretrained Vicuna weights for training.

MARS5 is a novel English speech model (TTS) developed by CAMB.AI, featuring a two-stage AR-NAR pipeline with a unique NAR component. The model can generate speech for various scenarios like sports commentary and anime with just 5 seconds of audio and a text snippet. It allows steering prosody using punctuation and capitalization in the transcript. Speaker identity is specified using an audio reference file, enabling 'deep clone' for improved quality. The model can be used via torch.hub or HuggingFace, supporting both shallow and deep cloning for inference. Checkpoints are provided for AR and NAR models, with hardware requirements of 750M+450M params on GPU. Contributions to improve model stability, performance, and reference audio selection are welcome.

COMFYUI LLM PARTY is a node library designed for LLM workflow development in ComfyUI, an extremely minimalist UI interface primarily used for AI drawing and SD model-based workflows. The project aims to provide a complete set of nodes for constructing LLM workflows, enabling users to easily integrate them into existing SD workflows. It features various functionalities such as API integration, local large model integration, RAG support, code interpreters, online queries, conditional statements, looping links for large models, persona mask attachment, and tool invocations for weather lookup, time lookup, knowledge base, code execution, web search, and single-page search. Users can rapidly develop web applications using API + Streamlit and utilize LLM as a tool node. Additionally, the project includes an omnipotent interpreter node that allows the large model to perform any task, with recommendations to use the 'show_text' node for display output.

This repository provides a Python implementation of a method that leverages pre-trained large language models to construct and utilize world models for model-based task planning. It includes scripts to generate domain models using natural language descriptions, correct domain models based on feedback, and support plan generation for tasks in different domains. The code has been refactored for better readability and includes tools for validating PDDL syntax and handling corrective feedback.

The Ersilia Model Hub is a unified platform of pre-trained AI/ML models dedicated to infectious and neglected disease research. It offers an open-source, low-code solution that provides seamless access to AI/ML models for drug discovery. Models housed in the hub come from two sources: published models from literature (with due third-party acknowledgment) and custom models developed by the Ersilia team or contributors.

NoLabs is an open-source biolab that provides easy access to state-of-the-art models for bio research. It supports various tasks, including drug discovery, protein analysis, and small molecule design. NoLabs aims to accelerate bio research by making inference models accessible to everyone.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

The Ersilia Model Hub is a unified platform of pre-trained AI/ML models dedicated to infectious and neglected disease research. It offers an open-source, low-code solution that provides seamless access to AI/ML models for drug discovery. Models housed in the hub come from two sources: published models from literature (with due third-party acknowledgment) and custom models developed by the Ersilia team or contributors.

OntoGPT is a Python package for extracting structured information from text using large language models, instruction prompts, and ontology-based grounding. It provides a command line interface and a minimal web app for easy usage. The tool has been evaluated on test data and is used in related projects like TALISMAN for gene set analysis. OntoGPT enables users to extract information from text by specifying relevant terms and provides the extracted objects as output.

BIA `bob` is a Jupyter-based assistant for interacting with data using large language models to generate Python code. It can utilize OpenAI's chatGPT, Google's Gemini, Helmholtz' blablador, and Ollama. Users need respective accounts to access these services. Bob can assist in code generation, bug fixing, code documentation, GPU-acceleration, and offers a no-code custom Jupyter Kernel. It provides example notebooks for various tasks like bio-image analysis, model selection, and bug fixing. Installation is recommended via conda/mamba environment. Custom endpoints like blablador and ollama can be used. Google Cloud AI API integration is also supported. The tool is extensible for Python libraries to enhance Bob's functionality.

Scientific Large Language Models (Sci-LLMs) is a repository that collects papers on scientific large language models, focusing on biology and chemistry domains. It includes textual, molecular, protein, and genomic languages, as well as multimodal language. The repository covers various large language models for tasks such as molecule property prediction, interaction prediction, protein sequence representation, protein sequence generation/design, DNA-protein interaction prediction, and RNA prediction. It also provides datasets and benchmarks for evaluating these models. The repository aims to facilitate research and development in the field of scientific language modeling.

Polaris establishes a novel, industry‑certified standard to foster the development of impactful methods in AI-based drug discovery. This library is a Python client to interact with the Polaris Hub. It allows you to download Polaris datasets and benchmarks, evaluate a custom method against a Polaris benchmark, and create and upload new datasets and benchmarks.

The 'awesome-AI4MolConformation-MD' repository focuses on protein conformations and molecular dynamics using generative artificial intelligence and deep learning. It provides resources, reviews, datasets, packages, and tools related to AI-driven molecular dynamics simulations. The repository covers a wide range of topics such as neural networks potentials, force fields, AI engines/frameworks, trajectory analysis, visualization tools, and various AI-based models for protein conformational sampling. It serves as a comprehensive guide for researchers and practitioners interested in leveraging AI for studying molecular structures and dynamics.