AI2BMD is a program for efficiently simulating protein molecular dynamics with ab initio accuracy. The repository contains datasets, simulation programs, and public materials related to AI2BMD. It provides a Docker image for easy deployment and a standalone launcher program. Users can run simulations by downloading the launcher script and specifying simulation parameters. The repository also includes ready-to-use protein structures for testing. AI2BMD is designed for x86-64 GNU/Linux systems with recommended hardware specifications. The related research includes model architectures like ViSNet, Geoformer, and fine-grained force metrics for MLFF. Citation information and contact details for the AI2BMD Team are provided.

InfLLM is a training-free memory-based method that unveils the intrinsic ability of LLMs to process streaming long sequences. It stores distant contexts into additional memory units and employs an efficient mechanism to lookup token-relevant units for attention computation. Thereby, InfLLM allows LLMs to efficiently process long sequences while maintaining the ability to capture long-distance dependencies. Without any training, InfLLM enables LLMs pre-trained on sequences of a few thousand tokens to achieve superior performance than competitive baselines continually training these LLMs on long sequences. Even when the sequence length is scaled to 1, 024K, InfLLM still effectively captures long-distance dependencies.

FuseMedML is a Python framework designed to accelerate machine learning-based discovery in the medical field by promoting code reuse. It provides a flexible design concept where data is stored in a nested dictionary, allowing easy handling of multi-modality information. The framework includes components for creating custom models, loss functions, metrics, and data processing operators. Additionally, FuseMedML offers 'batteries included' key components such as fuse.data for data processing, fuse.eval for model evaluation, and fuse.dl for reusable deep learning components. It supports PyTorch and PyTorch Lightning libraries and encourages the creation of domain extensions for specific medical domains.

This repository contains a sophisticated deterministic graph-based solution for answering complex questions using a controllable autonomous agent. The solution is designed to ensure that answers are solely based on the provided data, avoiding hallucinations. It involves various steps such as PDF loading, text preprocessing, summarization, database creation, encoding, and utilizing large language models. The algorithm follows a detailed workflow involving planning, retrieval, answering, replanning, content distillation, and performance evaluation. Heuristics and techniques implemented focus on content encoding, anonymizing questions, task breakdown, content distillation, chain of thought answering, verification, and model performance evaluation.

Nixtla is a production-ready generative pretrained transformer for time series forecasting and anomaly detection. It can accurately predict various domains such as retail, electricity, finance, and IoT with just a few lines of code. TimeGPT introduces a paradigm shift with its standout performance, efficiency, and simplicity, making it accessible even to users with minimal coding experience. The model is based on self-attention and is independently trained on a vast time series dataset to minimize forecasting error. It offers features like zero-shot inference, fine-tuning, API access, adding exogenous variables, multiple series forecasting, custom loss function, cross-validation, prediction intervals, and handling irregular timestamps.

The NVIDIA TensorRT Model Optimizer is a library designed to quantize and compress deep learning models for optimized inference on GPUs. It offers state-of-the-art model optimization techniques including quantization and sparsity to reduce inference costs for generative AI models. Users can easily stack different optimization techniques to produce quantized checkpoints from torch or ONNX models. The quantized checkpoints are ready for deployment in inference frameworks like TensorRT-LLM or TensorRT, with planned integrations for NVIDIA NeMo and Megatron-LM. The tool also supports 8-bit quantization with Stable Diffusion for enterprise users on NVIDIA NIM. Model Optimizer is available for free on NVIDIA PyPI, and this repository serves as a platform for sharing examples, GPU-optimized recipes, and collecting community feedback.

Turtle Benchmark is a novel and cheat-proof benchmark test used to evaluate large language models (LLMs). It is based on the Turtle Soup game, focusing on logical reasoning and context understanding abilities. The benchmark does not require background knowledge or model memory, providing all necessary information for judgment from stories under 200 words. The results are objective and unbiased, quantifiable as correct/incorrect/unknown, and impossible to cheat due to using real user-generated questions and dynamic data generation during online gameplay.

BitMat is a Python package designed to optimize matrix multiplication operations by utilizing custom kernels written in Triton. It leverages the principles outlined in the "1bit-LLM Era" paper, specifically utilizing packed int8 data to enhance computational efficiency and performance in deep learning and numerical computing tasks.

This repository contains code for training reward models for Deep Reinforcement Learning-based Reward-modulated Hierarchical Fine-tuning (DRL-based RLHF), Iterative Selection Fine-tuning (Rejection sampling fine-tuning), and iterative Decision Policy Optimization (DPO). The reward models are trained using a Bradley-Terry model based on the Gemma and Mistral language models. The resulting reward models achieve state-of-the-art performance on the RewardBench leaderboard for reward models with base models of up to 13B parameters.

LLM Blueprint is an official implementation of a paper that enables text-to-image generation with complex and detailed prompts. It leverages Large Language Models (LLMs) to extract critical components from text prompts, including bounding box coordinates for foreground objects, detailed textual descriptions for individual objects, and a succinct background context. The tool operates in two phases: Global Scene Generation creates an initial scene using object layouts and background context, and an Iterative Refinement Scheme refines box-level content to align with textual descriptions, ensuring consistency and improving recall compared to baseline diffusion models.

AI-TOD is a dataset for tiny object detection in aerial images, containing 700,621 object instances across 28,036 images. Objects in AI-TOD are smaller with a mean size of 12.8 pixels compared to other aerial image datasets. To use AI-TOD, download xView training set and AI-TOD_wo_xview, then generate the complete dataset using the provided synthesis tool. The dataset is publicly available for academic and research purposes under CC BY-NC-SA 4.0 license.

AITemplate (AIT) is a Python framework that transforms deep neural networks into CUDA (NVIDIA GPU) / HIP (AMD GPU) C++ code for lightning-fast inference serving. It offers high performance close to roofline fp16 TensorCore (NVIDIA GPU) / MatrixCore (AMD GPU) performance on major models. AITemplate is unified, open, and flexible, supporting a comprehensive range of fusions for both GPU platforms. It provides excellent backward capability, horizontal fusion, vertical fusion, memory fusion, and works with or without PyTorch. FX2AIT is a tool that converts PyTorch models into AIT for fast inference serving, offering easy conversion and expanded support for models with unsupported operators.

This repository contains the training and inference code needed to replicate the winning solution to the AI Mathematical Olympiad - Progress Prize 1. It consists of fine-tuning DeepSeekMath-Base 7B, high-quality training datasets, a self-consistency decoding algorithm, and carefully chosen validation sets. The training methodology involves Chain of Thought (CoT) and Tool Integrated Reasoning (TIR) training stages. Two datasets, NuminaMath-CoT and NuminaMath-TIR, were used to fine-tune the models. The models were trained using open-source libraries like TRL, PyTorch, vLLM, and DeepSpeed. Post-training quantization to 8-bit precision was done to improve performance on Kaggle's T4 GPUs. The project structure includes scripts for training, quantization, and inference, along with necessary installation instructions and hardware/software specifications.

MInference is a tool designed to accelerate pre-filling for long-context Language Models (LLMs) by leveraging dynamic sparse attention. It achieves up to a 10x speedup for pre-filling on an A100 while maintaining accuracy. The tool supports various decoding LLMs, including LLaMA-style models and Phi models, and provides custom kernels for attention computation. MInference is useful for researchers and developers working with large-scale language models who aim to improve efficiency without compromising accuracy.

XLearning is a scheduling platform for big data and artificial intelligence, supporting various machine learning and deep learning frameworks. It runs on Hadoop Yarn and integrates frameworks like TensorFlow, MXNet, Caffe, Theano, PyTorch, Keras, XGBoost. XLearning offers scalability, compatibility, multiple deep learning framework support, unified data management based on HDFS, visualization display, and compatibility with code at native frameworks. It provides functions for data input/output strategies, container management, TensorBoard service, and resource usage metrics display. XLearning requires JDK >= 1.7 and Maven >= 3.3 for compilation, and deployment on CentOS 7.2 with Java >= 1.7 and Hadoop 2.6, 2.7, 2.8.

Llumnix is a cross-instance request scheduling layer built on top of LLM inference engines such as vLLM, providing optimized multi-instance serving performance with low latency, reduced time-to-first-token (TTFT) and queuing delays, reduced time-between-tokens (TBT) and preemption stalls, and high throughput. It achieves this through dynamic, fine-grained, KV-cache-aware scheduling, continuous rescheduling across instances, KV cache migration mechanism, and seamless integration with existing multi-instance deployment platforms. Llumnix is easy to use, fault-tolerant, elastic, and extensible to more inference engines and scheduling policies.

AI2BMD is a program for efficiently simulating protein molecular dynamics with ab initio accuracy. The repository contains datasets, simulation programs, and public materials related to AI2BMD. It provides a Docker image for easy deployment and a standalone launcher program. Users can run simulations by downloading the launcher script and specifying simulation parameters. The repository also includes ready-to-use protein structures for testing. AI2BMD is designed for x86-64 GNU/Linux systems with recommended hardware specifications. The related research includes model architectures like ViSNet, Geoformer, and fine-grained force metrics for MLFF. Citation information and contact details for the AI2BMD Team are provided.

AIRS is a collection of open-source software tools, datasets, and benchmarks focused on Artificial Intelligence for Science in Quantum, Atomistic, and Continuum Systems. The goal is to develop and maintain an integrated, open, reproducible, and sustainable set of resources to advance the field of AI for Science. The current resources include tools for Quantum Mechanics, Density Functional Theory, Small Molecules, Protein Science, Materials Science, Molecular Interactions, and Partial Differential Equations.

Magick is a groundbreaking visual AIDE (Artificial Intelligence Development Environment) for no-code data pipelines and multimodal agents. Magick can connect to other services and comes with nodes and templates well-suited for intelligent agents, chatbots, complex reasoning systems and realistic characters.

Metaflow is a user-friendly library designed to assist scientists and engineers in developing and managing real-world data science projects. Initially created at Netflix, Metaflow aimed to enhance the productivity of data scientists working on diverse projects ranging from traditional statistics to cutting-edge deep learning. For further information, refer to Metaflow's website and documentation.

SciMLBenchmarks.jl holds webpages, pdfs, and notebooks showing the benchmarks for the SciML Scientific Machine Learning Software ecosystem, including: * Benchmarks of equation solver implementations * Speed and robustness comparisons of methods for parameter estimation / inverse problems * Training universal differential equations (and subsets like neural ODEs) * Training of physics-informed neural networks (PINNs) * Surrogate comparisons, including radial basis functions, neural operators (DeepONets, Fourier Neural Operators), and more The SciML Bench suite is made to be a comprehensive open source benchmark from the ground up, covering the methods of computational science and scientific computing all the way to AI for science.

Katib is a Kubernetes-native project for automated machine learning (AutoML). Katib supports Hyperparameter Tuning, Early Stopping and Neural Architecture Search. Katib is the project which is agnostic to machine learning (ML) frameworks. It can tune hyperparameters of applications written in any language of the users’ choice and natively supports many ML frameworks, such as TensorFlow, Apache MXNet, PyTorch, XGBoost, and others. Katib can perform training jobs using any Kubernetes Custom Resources with out of the box support for Kubeflow Training Operator, Argo Workflows, Tekton Pipelines and many more.

X-AnyLabeling is a robust annotation tool that seamlessly incorporates an AI inference engine alongside an array of sophisticated features. Tailored for practical applications, it is committed to delivering comprehensive, industrial-grade solutions for image data engineers. This tool excels in swiftly and automatically executing annotations across diverse and intricate tasks.

Backend.AI is a streamlined, container-based computing cluster platform that hosts popular computing/ML frameworks and diverse programming languages, with pluggable heterogeneous accelerator support including CUDA GPU, ROCm GPU, TPU, IPU and other NPUs. It allocates and isolates the underlying computing resources for multi-tenant computation sessions on-demand or in batches with customizable job schedulers with its own orchestrator. All its functions are exposed as REST/GraphQL/WebSocket APIs.

Generative-AI-Drug-Discovery is a public repository on GitHub focused on using tensor network machine learning approaches to accelerate GenAI for drug discovery. The repository aims to implement effective architectures and methodologies into Large Language Models (LLMs) to enhance Drug Discovery Generative AI performance.

AI2BMD is a program for efficiently simulating protein molecular dynamics with ab initio accuracy. The repository contains datasets, simulation programs, and public materials related to AI2BMD. It provides a Docker image for easy deployment and a standalone launcher program. Users can run simulations by downloading the launcher script and specifying simulation parameters. The repository also includes ready-to-use protein structures for testing. AI2BMD is designed for x86-64 GNU/Linux systems with recommended hardware specifications. The related research includes model architectures like ViSNet, Geoformer, and fine-grained force metrics for MLFF. Citation information and contact details for the AI2BMD Team are provided.

Grand Challenge is a platform that provides access to large amounts of annotated training data, objective comparisons of state-of-the-art machine learning solutions, and clinical validation using real-world data. It assists researchers, data scientists, and clinicians in collaborating to develop robust machine learning solutions to problems in biomedical imaging.

This tool is designed to detect and classify Alzheimer's Disease using Deep Learning and Machine Learning algorithms on an early basis, which is further optimized using the Crow Search Algorithm (CSA). Alzheimer's is a fatal disease, and early detection is crucial for patients to predetermine their condition and prevent its progression. By analyzing MRI scanned images using Artificial Intelligence technology, this tool can classify patients who may or may not develop AD in the future. The CSA algorithm, combined with ML algorithms, has proven to be the most effective approach for this purpose.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.

FuseMedML is a Python framework designed to accelerate machine learning-based discovery in the medical field by promoting code reuse. It provides a flexible design concept where data is stored in a nested dictionary, allowing easy handling of multi-modality information. The framework includes components for creating custom models, loss functions, metrics, and data processing operators. Additionally, FuseMedML offers 'batteries included' key components such as fuse.data for data processing, fuse.eval for model evaluation, and fuse.dl for reusable deep learning components. It supports PyTorch and PyTorch Lightning libraries and encourages the creation of domain extensions for specific medical domains.

The Microsoft Health Intelligence Machine Learning Toolbox is a repository that provides low-level and high-level building blocks for Machine Learning / AI researchers and practitioners. It simplifies and streamlines work on deep learning models for healthcare and life sciences by offering tested components such as data loaders, pre-processing tools, deep learning models, and cloud integration utilities. The repository includes two Python packages, 'hi-ml-azure' for helper functions in AzureML, 'hi-ml' for ML components, and 'hi-ml-cpath' for models and workflows related to histopathology images.