AI2BMD is a program for efficiently simulating protein molecular dynamics with ab initio accuracy. The repository contains datasets, simulation programs, and public materials related to AI2BMD. It provides a Docker image for easy deployment and a standalone launcher program. Users can run simulations by downloading the launcher script and specifying simulation parameters. The repository also includes ready-to-use protein structures for testing. AI2BMD is designed for x86-64 GNU/Linux systems with recommended hardware specifications. The related research includes model architectures like ViSNet, Geoformer, and fine-grained force metrics for MLFF. Citation information and contact details for the AI2BMD Team are provided.

InfLLM is a training-free memory-based method that unveils the intrinsic ability of LLMs to process streaming long sequences. It stores distant contexts into additional memory units and employs an efficient mechanism to lookup token-relevant units for attention computation. Thereby, InfLLM allows LLMs to efficiently process long sequences while maintaining the ability to capture long-distance dependencies. Without any training, InfLLM enables LLMs pre-trained on sequences of a few thousand tokens to achieve superior performance than competitive baselines continually training these LLMs on long sequences. Even when the sequence length is scaled to 1, 024K, InfLLM still effectively captures long-distance dependencies.

agentUniverse is a framework for developing applications powered by multi-agent based on large language model. It provides essential components for building single agent and multi-agent collaboration mechanism for customizing collaboration patterns. Developers can easily construct multi-agent applications and share pattern practices from different fields. The framework includes pre-installed collaboration patterns like PEER and DOE for complex task breakdown and data-intensive tasks.

FuseMedML is a Python framework designed to accelerate machine learning-based discovery in the medical field by promoting code reuse. It provides a flexible design concept where data is stored in a nested dictionary, allowing easy handling of multi-modality information. The framework includes components for creating custom models, loss functions, metrics, and data processing operators. Additionally, FuseMedML offers 'batteries included' key components such as fuse.data for data processing, fuse.eval for model evaluation, and fuse.dl for reusable deep learning components. It supports PyTorch and PyTorch Lightning libraries and encourages the creation of domain extensions for specific medical domains.

Nixtla is a production-ready generative pretrained transformer for time series forecasting and anomaly detection. It can accurately predict various domains such as retail, electricity, finance, and IoT with just a few lines of code. TimeGPT introduces a paradigm shift with its standout performance, efficiency, and simplicity, making it accessible even to users with minimal coding experience. The model is based on self-attention and is independently trained on a vast time series dataset to minimize forecasting error. It offers features like zero-shot inference, fine-tuning, API access, adding exogenous variables, multiple series forecasting, custom loss function, cross-validation, prediction intervals, and handling irregular timestamps.

AIKA (Artificial Intelligence for Knowledge Acquisition) is a new type of artificial neural network designed to mimic the behavior of a biological brain more closely and bridge the gap to classical AI. The network conceptually separates activations from neurons, creating two separate graphs to represent acquired knowledge and inferred information. It uses different types of neurons and synapses to propagate activation values, binding signals, causal relations, and training gradients. The network structure allows for flexible topology and supports the gradual population of neurons and synapses during training.

The NVIDIA TensorRT Model Optimizer is a library designed to quantize and compress deep learning models for optimized inference on GPUs. It offers state-of-the-art model optimization techniques including quantization and sparsity to reduce inference costs for generative AI models. Users can easily stack different optimization techniques to produce quantized checkpoints from torch or ONNX models. The quantized checkpoints are ready for deployment in inference frameworks like TensorRT-LLM or TensorRT, with planned integrations for NVIDIA NeMo and Megatron-LM. The tool also supports 8-bit quantization with Stable Diffusion for enterprise users on NVIDIA NIM. Model Optimizer is available for free on NVIDIA PyPI, and this repository serves as a platform for sharing examples, GPU-optimized recipes, and collecting community feedback.

This repository contains a sophisticated deterministic graph-based solution for answering complex questions using a controllable autonomous agent. The solution is designed to ensure that answers are solely based on the provided data, avoiding hallucinations. It involves various steps such as PDF loading, text preprocessing, summarization, database creation, encoding, and utilizing large language models. The algorithm follows a detailed workflow involving planning, retrieval, answering, replanning, content distillation, and performance evaluation. Heuristics and techniques implemented focus on content encoding, anonymizing questions, task breakdown, content distillation, chain of thought answering, verification, and model performance evaluation.

Turtle Benchmark is a novel and cheat-proof benchmark test used to evaluate large language models (LLMs). It is based on the Turtle Soup game, focusing on logical reasoning and context understanding abilities. The benchmark does not require background knowledge or model memory, providing all necessary information for judgment from stories under 200 words. The results are objective and unbiased, quantifiable as correct/incorrect/unknown, and impossible to cheat due to using real user-generated questions and dynamic data generation during online gameplay.

BitMat is a Python package designed to optimize matrix multiplication operations by utilizing custom kernels written in Triton. It leverages the principles outlined in the "1bit-LLM Era" paper, specifically utilizing packed int8 data to enhance computational efficiency and performance in deep learning and numerical computing tasks.

AI-Driven Research Assistant is an advanced AI-powered system utilizing specialized agents for data analysis, visualization, and report generation. It integrates LangChain, OpenAI's GPT models, and LangGraph for complex research processes. Key features include hypothesis generation, data processing, web search, code generation, and report writing. The system's unique Note Taker agent maintains project state, reducing overhead and improving context retention. System requirements include Python 3.10+ and Jupyter Notebook environment. Installation involves cloning the repository, setting up a Conda virtual environment, installing dependencies, and configuring environment variables. Usage instructions include setting data, running Jupyter Notebook, customizing research tasks, and viewing results. Main components include agents for hypothesis generation, process supervision, visualization, code writing, search, report writing, quality review, and note-taking. Workflow involves hypothesis generation, processing, quality review, and revision. Customization is possible by modifying agent creation and workflow definition. Current issues include OpenAI errors, NoteTaker efficiency, runtime optimization, and refiner improvement. Contributions via pull requests are welcome under the MIT License.

DemoGPT is an all-in-one agent library that provides tools, prompts, frameworks, and LLM models for streamlined agent development. It leverages GPT-3.5-turbo to generate LangChain code, creating interactive Streamlit applications. The tool is designed for creating intelligent, interactive, and inclusive solutions in LLM-based application development. It offers model flexibility, iterative development, and a commitment to user engagement. Future enhancements include integrating Gorilla for autonomous API usage and adding a publicly available database for refining the generation process.

This repository contains code for training reward models for Deep Reinforcement Learning-based Reward-modulated Hierarchical Fine-tuning (DRL-based RLHF), Iterative Selection Fine-tuning (Rejection sampling fine-tuning), and iterative Decision Policy Optimization (DPO). The reward models are trained using a Bradley-Terry model based on the Gemma and Mistral language models. The resulting reward models achieve state-of-the-art performance on the RewardBench leaderboard for reward models with base models of up to 13B parameters.

Macaw-LLM is a pioneering multi-modal language modeling tool that seamlessly integrates image, audio, video, and text data. It builds upon CLIP, Whisper, and LLaMA models to process and analyze multi-modal information effectively. The tool boasts features like simple and fast alignment, one-stage instruction fine-tuning, and a new multi-modal instruction dataset. It enables users to align multi-modal features efficiently, encode instructions, and generate responses across different data types.

This repository contains the official codebase for Bittensor Subnet 1 (SN1) v1.0.0+, released on 22nd January 2024. It defines an incentive mechanism to create a distributed conversational AI for Subnet 1. Validators and miners are based on large language models (LLM) using internet-scale datasets and goal-driven behavior to drive human-like conversations. The repository requires python3.9 or higher and provides compute requirements for running validators and miners. Users can run miners or validators using specific commands and are encouraged to run on the testnet before deploying on the main network. The repository also highlights limitations and provides resources for understanding the architecture and methodology of SN1.

AI2BMD is a program for efficiently simulating protein molecular dynamics with ab initio accuracy. The repository contains datasets, simulation programs, and public materials related to AI2BMD. It provides a Docker image for easy deployment and a standalone launcher program. Users can run simulations by downloading the launcher script and specifying simulation parameters. The repository also includes ready-to-use protein structures for testing. AI2BMD is designed for x86-64 GNU/Linux systems with recommended hardware specifications. The related research includes model architectures like ViSNet, Geoformer, and fine-grained force metrics for MLFF. Citation information and contact details for the AI2BMD Team are provided.

AI-Drug-Discovery-Design is a repository focused on Artificial Intelligence-assisted Drug Discovery and Design. It explores the use of AI technology to accelerate and optimize the drug development process. The advantages of AI in drug design include speeding up research cycles, improving accuracy through data-driven models, reducing costs by minimizing experimental redundancies, and enabling personalized drug design for specific patients or disease characteristics.

AIRS is a collection of open-source software tools, datasets, and benchmarks focused on Artificial Intelligence for Science in Quantum, Atomistic, and Continuum Systems. The goal is to develop and maintain an integrated, open, reproducible, and sustainable set of resources to advance the field of AI for Science. The current resources include tools for Quantum Mechanics, Density Functional Theory, Small Molecules, Protein Science, Materials Science, Molecular Interactions, and Partial Differential Equations.

Magick is a groundbreaking visual AIDE (Artificial Intelligence Development Environment) for no-code data pipelines and multimodal agents. Magick can connect to other services and comes with nodes and templates well-suited for intelligent agents, chatbots, complex reasoning systems and realistic characters.

Metaflow is a user-friendly library designed to assist scientists and engineers in developing and managing real-world data science projects. Initially created at Netflix, Metaflow aimed to enhance the productivity of data scientists working on diverse projects ranging from traditional statistics to cutting-edge deep learning. For further information, refer to Metaflow's website and documentation.

SciMLBenchmarks.jl holds webpages, pdfs, and notebooks showing the benchmarks for the SciML Scientific Machine Learning Software ecosystem, including: * Benchmarks of equation solver implementations * Speed and robustness comparisons of methods for parameter estimation / inverse problems * Training universal differential equations (and subsets like neural ODEs) * Training of physics-informed neural networks (PINNs) * Surrogate comparisons, including radial basis functions, neural operators (DeepONets, Fourier Neural Operators), and more The SciML Bench suite is made to be a comprehensive open source benchmark from the ground up, covering the methods of computational science and scientific computing all the way to AI for science.

Katib is a Kubernetes-native project for automated machine learning (AutoML). Katib supports Hyperparameter Tuning, Early Stopping and Neural Architecture Search. Katib is the project which is agnostic to machine learning (ML) frameworks. It can tune hyperparameters of applications written in any language of the users’ choice and natively supports many ML frameworks, such as TensorFlow, Apache MXNet, PyTorch, XGBoost, and others. Katib can perform training jobs using any Kubernetes Custom Resources with out of the box support for Kubeflow Training Operator, Argo Workflows, Tekton Pipelines and many more.

X-AnyLabeling is a robust annotation tool that seamlessly incorporates an AI inference engine alongside an array of sophisticated features. Tailored for practical applications, it is committed to delivering comprehensive, industrial-grade solutions for image data engineers. This tool excels in swiftly and automatically executing annotations across diverse and intricate tasks.

Generative-AI-Drug-Discovery is a public repository on GitHub focused on using tensor network machine learning approaches to accelerate GenAI for drug discovery. The repository aims to implement effective architectures and methodologies into Large Language Models (LLMs) to enhance Drug Discovery Generative AI performance.

AI2BMD is a program for efficiently simulating protein molecular dynamics with ab initio accuracy. The repository contains datasets, simulation programs, and public materials related to AI2BMD. It provides a Docker image for easy deployment and a standalone launcher program. Users can run simulations by downloading the launcher script and specifying simulation parameters. The repository also includes ready-to-use protein structures for testing. AI2BMD is designed for x86-64 GNU/Linux systems with recommended hardware specifications. The related research includes model architectures like ViSNet, Geoformer, and fine-grained force metrics for MLFF. Citation information and contact details for the AI2BMD Team are provided.

mercure DICOM Orchestrator is a flexible solution for routing and processing DICOM files. It offers a user-friendly web interface and extensive monitoring functions. Custom processing modules can be implemented as Docker containers. Written in Python, it uses the DCMTK toolkit for DICOM communication. It can be deployed as a single-server installation using Docker Compose or as a scalable cluster installation using Nomad. mercure consists of service modules for receiving, routing, processing, dispatching, cleaning, web interface, and central monitoring.

ProLLM is a framework that leverages Large Language Models to interpret and analyze protein sequences and interactions through natural language processing. It introduces the Protein Chain of Thought (ProCoT) method to transform complex protein interaction data into intuitive prompts, enhancing predictive accuracy by incorporating protein-specific embeddings and fine-tuning on domain-specific datasets.

Grand Challenge is a platform that provides access to large amounts of annotated training data, objective comparisons of state-of-the-art machine learning solutions, and clinical validation using real-world data. It assists researchers, data scientists, and clinicians in collaborating to develop robust machine learning solutions to problems in biomedical imaging.

This tool is designed to detect and classify Alzheimer's Disease using Deep Learning and Machine Learning algorithms on an early basis, which is further optimized using the Crow Search Algorithm (CSA). Alzheimer's is a fatal disease, and early detection is crucial for patients to predetermine their condition and prevent its progression. By analyzing MRI scanned images using Artificial Intelligence technology, this tool can classify patients who may or may not develop AD in the future. The CSA algorithm, combined with ML algorithms, has proven to be the most effective approach for this purpose.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.