ProLLM is a framework that leverages Large Language Models to interpret and analyze protein sequences and interactions through natural language processing. It introduces the Protein Chain of Thought (ProCoT) method to transform complex protein interaction data into intuitive prompts, enhancing predictive accuracy by incorporating protein-specific embeddings and fine-tuning on domain-specific datasets.

Only Train Once (OTO) is an automatic, architecture-agnostic DNN training and compression framework that allows users to train a general DNN from scratch or a pretrained checkpoint to achieve high performance and slimmer architecture simultaneously in a one-shot manner without fine-tuning. The framework includes features for automatic structured pruning and erasing operators, as well as hybrid structured sparse optimizers for efficient model compression. OTO provides tools for pruning zero-invariant group partitioning, constructing pruned models, and visualizing pruning and erasing dependency graphs. It supports the HESSO optimizer and offers a sanity check for compliance testing on various DNNs. The repository also includes publications, installation instructions, quick start guides, and a roadmap for future enhancements and collaborations.

K2 (GeoLLaMA) is a large language model for geoscience, trained on geoscience literature and fine-tuned with knowledge-intensive instruction data. It outperforms baseline models on objective and subjective tasks. The repository provides K2 weights, core data of GeoSignal, GeoBench benchmark, and code for further pretraining and instruction tuning. The model is available on Hugging Face for use. The project aims to create larger and more powerful geoscience language models in the future.

Genesis is a physics platform designed for general purpose Robotics/Embodied AI/Physical AI applications. It includes a universal physics engine, a lightweight, ultra-fast, pythonic, and user-friendly robotics simulation platform, a powerful and fast photo-realistic rendering system, and a generative data engine that transforms user-prompted natural language description into various modalities of data. It aims to lower the barrier to using physics simulations, unify state-of-the-art physics solvers, and minimize human effort in collecting and generating data for robotics and other domains.

Reflection-Tuning is a project focused on improving the quality of instruction-tuning data through a reflection-based method. It introduces Selective Reflection-Tuning, where the student model can decide whether to accept the improvements made by the teacher model. The project aims to generate high-quality instruction-response pairs by defining specific criteria for the oracle model to follow and respond to. It also evaluates the efficacy and relevance of instruction-response pairs using the r-IFD metric. The project provides code for reflection and selection processes, along with data and model weights for both V1 and V2 methods.

Nous is an open-source TypeScript platform for autonomous AI agents and LLM based workflows. It aims to automate processes, support requests, review code, assist with refactorings, and more. The platform supports various integrations, multiple LLMs/services, CLI and web interface, human-in-the-loop interactions, flexible deployment options, observability with OpenTelemetry tracing, and specific agents for code editing, software engineering, and code review. It offers advanced features like reasoning/planning, memory and function call history, hierarchical task decomposition, and control-loop function calling options. Nous is designed to be a flexible platform for the TypeScript community to expand and support different use cases and integrations.

CALF (LLaTA) is a cross-modal fine-tuning framework that bridges the distribution discrepancy between temporal data and the textual nature of LLMs. It introduces three cross-modal fine-tuning techniques: Cross-Modal Match Module, Feature Regularization Loss, and Output Consistency Loss. The framework aligns time series and textual inputs, ensures effective weight updates, and maintains consistent semantic context for time series data. CALF provides scripts for long-term and short-term forecasting, requires Python 3.9, and utilizes word token embeddings for model training.

Codellm-devkit (CLDK) is a Python library that serves as a multilingual program analysis framework bridging traditional static analysis tools and Large Language Models (LLMs) specialized for code (CodeLLMs). It simplifies the process of analyzing codebases across multiple programming languages, enabling the extraction of meaningful insights and facilitating LLM-based code analysis. The library provides a unified interface for integrating outputs from various analysis tools and preparing them for effective use by CodeLLMs. Codellm-devkit aims to enable the development and experimentation of robust analysis pipelines that combine traditional program analysis tools and CodeLLMs, reducing friction in multi-language code analysis and ensuring compatibility across different tools and LLM platforms. It is designed to seamlessly integrate with popular analysis tools like WALA, Tree-sitter, LLVM, and CodeQL, acting as a crucial intermediary layer for efficient communication between these tools and CodeLLMs. The project is continuously evolving to include new tools and frameworks, maintaining its versatility for code analysis and LLM integration.

The development of Natural Language Interfaces to Databases (NLIDBs) has been greatly advanced by the advent of large language models (LLMs), which provide an intuitive way to translate natural language (NL) questions into Structured Query Language (SQL) queries. DBCopilot is a framework that addresses challenges in real-world scenarios of natural language querying over massive databases by employing a compact and flexible copilot model for routing. It decouples schema-agnostic NL2SQL into schema routing and SQL generation, utilizing a lightweight differentiable search index for semantic mappings and relation-aware joint retrieval. DBCopilot introduces a reverse schema-to-question generation paradigm for automatic learning and adaptation over massive databases, providing a scalable and effective solution for schema-agnostic NL2SQL.

MInference is a tool designed to accelerate pre-filling for long-context Language Models (LLMs) by leveraging dynamic sparse attention. It achieves up to a 10x speedup for pre-filling on an A100 while maintaining accuracy. The tool supports various decoding LLMs, including LLaMA-style models and Phi models, and provides custom kernels for attention computation. MInference is useful for researchers and developers working with large-scale language models who aim to improve efficiency without compromising accuracy.

FATE-LLM is a framework supporting federated learning for large and small language models. It promotes training efficiency of federated LLMs using Parameter-Efficient methods, protects the IP of LLMs using FedIPR, and ensures data privacy during training and inference through privacy-preserving mechanisms.

dLLM-RL is a revolutionary reinforcement learning framework designed for Diffusion Large Language Models. It supports various models with diverse structures, offers inference acceleration, RL training capabilities, and SFT functionalities. The tool introduces TraceRL for trajectory-aware RL and diffusion-based value models for optimization stability. Users can download and try models like TraDo-4B-Instruct and TraDo-8B-Instruct. The tool also provides support for multi-node setups and easy building of reinforcement learning methods. Additionally, it offers supervised fine-tuning strategies for different models and tasks.

This repository is dedicated to the pruning of large language models (LLMs). It aims to serve as a comprehensive resource for researchers and practitioners interested in the efficient reduction of model size while maintaining or enhancing performance. The repository contains various papers, summaries, and links related to different pruning approaches for LLMs, along with author information and publication details. It covers a wide range of topics such as structured pruning, unstructured pruning, semi-structured pruning, and benchmarking methods. Researchers and practitioners can explore different pruning techniques, understand their implications, and access relevant resources for further study and implementation.

The repository Adaptive-MT-LLM-Fine-tuning contains code and data for the paper 'Fine-tuning Large Language Models for Adaptive Machine Translation'. It focuses on enhancing Mistral 7B, a large language model, for real-time adaptive machine translation in the medical domain. The fine-tuning process involves using zero-shot and one-shot translation prompts to improve terminology and style adherence. The repository includes training and test data, data processing code, fuzzy match retrieval techniques, fine-tuning methods, conversion to CTranslate2 format, tokenizers, translation codes, and evaluation metrics.

ChatLaw is an open-source legal large language model tailored for Chinese legal scenarios. It aims to combine LLM and knowledge bases to provide solutions for legal scenarios. The models include ChatLaw-13B and ChatLaw-33B, trained on various legal texts to construct dialogue data. The project focuses on improving logical reasoning abilities and plans to train models with parameters exceeding 30B for better performance. The dataset consists of forum posts, news, legal texts, judicial interpretations, legal consultations, exam questions, and court judgments, cleaned and enhanced to create dialogue data. The tool is designed to assist in legal tasks requiring complex logical reasoning, with a focus on accuracy and reliability.

FinRobot is an open-source AI agent platform designed for financial applications using large language models. It transcends the scope of FinGPT, offering a comprehensive solution that integrates a diverse array of AI technologies. The platform's versatility and adaptability cater to the multifaceted needs of the financial industry. FinRobot's ecosystem is organized into four layers, including Financial AI Agents Layer, Financial LLMs Algorithms Layer, LLMOps and DataOps Layers, and Multi-source LLM Foundation Models Layer. The platform's agent workflow involves Perception, Brain, and Action modules to capture, process, and execute financial data and insights. The Smart Scheduler optimizes model diversity and selection for tasks, managed by components like Director Agent, Agent Registration, Agent Adaptor, and Task Manager. The tool provides a structured file organization with subfolders for agents, data sources, and functional modules, along with installation instructions and hands-on tutorials.

ProLLM is a framework that leverages Large Language Models to interpret and analyze protein sequences and interactions through natural language processing. It introduces the Protein Chain of Thought (ProCoT) method to transform complex protein interaction data into intuitive prompts, enhancing predictive accuracy by incorporating protein-specific embeddings and fine-tuning on domain-specific datasets.

TokenPacker is a novel visual projector that compresses visual tokens by 75%∼89% with high efficiency. It adopts a 'coarse-to-fine' scheme to generate condensed visual tokens, achieving comparable or better performance across diverse benchmarks. The tool includes TokenPacker for general use and TokenPacker-HD for high-resolution image understanding. It provides training scripts, checkpoints, and supports various compression ratios and patch numbers.

Macaw-LLM is a pioneering multi-modal language modeling tool that seamlessly integrates image, audio, video, and text data. It builds upon CLIP, Whisper, and LLaMA models to process and analyze multi-modal information effectively. The tool boasts features like simple and fast alignment, one-stage instruction fine-tuning, and a new multi-modal instruction dataset. It enables users to align multi-modal features efficiently, encode instructions, and generate responses across different data types.

Generative-AI-Drug-Discovery is a public repository on GitHub focused on using tensor network machine learning approaches to accelerate GenAI for drug discovery. The repository aims to implement effective architectures and methodologies into Large Language Models (LLMs) to enhance Drug Discovery Generative AI performance.

AI2BMD is a program for efficiently simulating protein molecular dynamics with ab initio accuracy. The repository contains datasets, simulation programs, and public materials related to AI2BMD. It provides a Docker image for easy deployment and a standalone launcher program. Users can run simulations by downloading the launcher script and specifying simulation parameters. The repository also includes ready-to-use protein structures for testing. AI2BMD is designed for x86-64 GNU/Linux systems with recommended hardware specifications. The related research includes model architectures like ViSNet, Geoformer, and fine-grained force metrics for MLFF. Citation information and contact details for the AI2BMD Team are provided.

mercure DICOM Orchestrator is a flexible solution for routing and processing DICOM files. It offers a user-friendly web interface and extensive monitoring functions. Custom processing modules can be implemented as Docker containers. Written in Python, it uses the DCMTK toolkit for DICOM communication. It can be deployed as a single-server installation using Docker Compose or as a scalable cluster installation using Nomad. mercure consists of service modules for receiving, routing, processing, dispatching, cleaning, web interface, and central monitoring.

ProLLM is a framework that leverages Large Language Models to interpret and analyze protein sequences and interactions through natural language processing. It introduces the Protein Chain of Thought (ProCoT) method to transform complex protein interaction data into intuitive prompts, enhancing predictive accuracy by incorporating protein-specific embeddings and fine-tuning on domain-specific datasets.

Grand Challenge is a platform that provides access to large amounts of annotated training data, objective comparisons of state-of-the-art machine learning solutions, and clinical validation using real-world data. It assists researchers, data scientists, and clinicians in collaborating to develop robust machine learning solutions to problems in biomedical imaging.

This tool is designed to detect and classify Alzheimer's Disease using Deep Learning and Machine Learning algorithms on an early basis, which is further optimized using the Crow Search Algorithm (CSA). Alzheimer's is a fatal disease, and early detection is crucial for patients to predetermine their condition and prevent its progression. By analyzing MRI scanned images using Artificial Intelligence technology, this tool can classify patients who may or may not develop AD in the future. The CSA algorithm, combined with ML algorithms, has proven to be the most effective approach for this purpose.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.