ProLLM is a framework that leverages Large Language Models to interpret and analyze protein sequences and interactions through natural language processing. It introduces the Protein Chain of Thought (ProCoT) method to transform complex protein interaction data into intuitive prompts, enhancing predictive accuracy by incorporating protein-specific embeddings and fine-tuning on domain-specific datasets.

Only Train Once (OTO) is an automatic, architecture-agnostic DNN training and compression framework that allows users to train a general DNN from scratch or a pretrained checkpoint to achieve high performance and slimmer architecture simultaneously in a one-shot manner without fine-tuning. The framework includes features for automatic structured pruning and erasing operators, as well as hybrid structured sparse optimizers for efficient model compression. OTO provides tools for pruning zero-invariant group partitioning, constructing pruned models, and visualizing pruning and erasing dependency graphs. It supports the HESSO optimizer and offers a sanity check for compliance testing on various DNNs. The repository also includes publications, installation instructions, quick start guides, and a roadmap for future enhancements and collaborations.

Macaw-LLM is a pioneering multi-modal language modeling tool that seamlessly integrates image, audio, video, and text data. It builds upon CLIP, Whisper, and LLaMA models to process and analyze multi-modal information effectively. The tool boasts features like simple and fast alignment, one-stage instruction fine-tuning, and a new multi-modal instruction dataset. It enables users to align multi-modal features efficiently, encode instructions, and generate responses across different data types.

K2 (GeoLLaMA) is a large language model for geoscience, trained on geoscience literature and fine-tuned with knowledge-intensive instruction data. It outperforms baseline models on objective and subjective tasks. The repository provides K2 weights, core data of GeoSignal, GeoBench benchmark, and code for further pretraining and instruction tuning. The model is available on Hugging Face for use. The project aims to create larger and more powerful geoscience language models in the future.

Genesis is a physics platform designed for general purpose Robotics/Embodied AI/Physical AI applications. It includes a universal physics engine, a lightweight, ultra-fast, pythonic, and user-friendly robotics simulation platform, a powerful and fast photo-realistic rendering system, and a generative data engine that transforms user-prompted natural language description into various modalities of data. It aims to lower the barrier to using physics simulations, unify state-of-the-art physics solvers, and minimize human effort in collecting and generating data for robotics and other domains.

DashInfer is a C++ runtime tool designed to deliver production-level implementations highly optimized for various hardware architectures, including x86 and ARMv9. It supports Continuous Batching and NUMA-Aware capabilities for CPU, and can fully utilize modern server-grade CPUs to host large language models (LLMs) up to 14B in size. With lightweight architecture, high precision, support for mainstream open-source LLMs, post-training quantization, optimized computation kernels, NUMA-aware design, and multi-language API interfaces, DashInfer provides a versatile solution for efficient inference tasks. It supports x86 CPUs with AVX2 instruction set and ARMv9 CPUs with SVE instruction set, along with various data types like FP32, BF16, and InstantQuant. DashInfer also offers single-NUMA and multi-NUMA architectures for model inference, with detailed performance tests and inference accuracy evaluations available. The tool is supported on mainstream Linux server operating systems and provides documentation and examples for easy integration and usage.

InsPLAD is a dataset and benchmark for power line asset inspection in UAV images. It contains 10,607 high-resolution UAV color images of seventeen unique power line assets with six defects. The dataset is used for object detection, defect classification, and anomaly detection tasks in computer vision. InsPLAD offers challenges like multi-scale objects, intra-class variation, cluttered background, and varied lighting conditions, aiming to improve state-of-the-art methods in the field.

Nous is an open-source TypeScript platform for autonomous AI agents and LLM based workflows. It aims to automate processes, support requests, review code, assist with refactorings, and more. The platform supports various integrations, multiple LLMs/services, CLI and web interface, human-in-the-loop interactions, flexible deployment options, observability with OpenTelemetry tracing, and specific agents for code editing, software engineering, and code review. It offers advanced features like reasoning/planning, memory and function call history, hierarchical task decomposition, and control-loop function calling options. Nous is designed to be a flexible platform for the TypeScript community to expand and support different use cases and integrations.

Oat is a simple and efficient framework for running online LLM alignment algorithms. It implements a distributed Actor-Learner-Oracle architecture, with components optimized using state-of-the-art tools. Oat simplifies the experimental pipeline of LLM alignment by serving an Oracle online for preference data labeling and model evaluation. It provides a variety of oracles for simulating feedback and supports verifiable rewards. Oat's modular structure allows for easy inheritance and modification of classes, enabling rapid prototyping and experimentation with new algorithms. The framework implements cutting-edge online algorithms like PPO for math reasoning and various online exploration algorithms.

Codellm-devkit (CLDK) is a Python library that serves as a multilingual program analysis framework bridging traditional static analysis tools and Large Language Models (LLMs) specialized for code (CodeLLMs). It simplifies the process of analyzing codebases across multiple programming languages, enabling the extraction of meaningful insights and facilitating LLM-based code analysis. The library provides a unified interface for integrating outputs from various analysis tools and preparing them for effective use by CodeLLMs. Codellm-devkit aims to enable the development and experimentation of robust analysis pipelines that combine traditional program analysis tools and CodeLLMs, reducing friction in multi-language code analysis and ensuring compatibility across different tools and LLM platforms. It is designed to seamlessly integrate with popular analysis tools like WALA, Tree-sitter, LLVM, and CodeQL, acting as a crucial intermediary layer for efficient communication between these tools and CodeLLMs. The project is continuously evolving to include new tools and frameworks, maintaining its versatility for code analysis and LLM integration.

MathCoder is a repository focused on enhancing mathematical reasoning by fine-tuning open-source language models to use code for modeling and deriving math equations. It introduces MathCodeInstruct dataset with solutions interleaving natural language, code, and execution results. The repository provides MathCoder models capable of generating code-based solutions for challenging math problems, achieving state-of-the-art scores on MATH and GSM8K datasets. It offers tools for model deployment, inference, and evaluation, along with a citation for referencing the work.

The development of Natural Language Interfaces to Databases (NLIDBs) has been greatly advanced by the advent of large language models (LLMs), which provide an intuitive way to translate natural language (NL) questions into Structured Query Language (SQL) queries. DBCopilot is a framework that addresses challenges in real-world scenarios of natural language querying over massive databases by employing a compact and flexible copilot model for routing. It decouples schema-agnostic NL2SQL into schema routing and SQL generation, utilizing a lightweight differentiable search index for semantic mappings and relation-aware joint retrieval. DBCopilot introduces a reverse schema-to-question generation paradigm for automatic learning and adaptation over massive databases, providing a scalable and effective solution for schema-agnostic NL2SQL.

MInference is a tool designed to accelerate pre-filling for long-context Language Models (LLMs) by leveraging dynamic sparse attention. It achieves up to a 10x speedup for pre-filling on an A100 while maintaining accuracy. The tool supports various decoding LLMs, including LLaMA-style models and Phi models, and provides custom kernels for attention computation. MInference is useful for researchers and developers working with large-scale language models who aim to improve efficiency without compromising accuracy.

FATE-LLM is a framework supporting federated learning for large and small language models. It promotes training efficiency of federated LLMs using Parameter-Efficient methods, protects the IP of LLMs using FedIPR, and ensures data privacy during training and inference through privacy-preserving mechanisms.

Gemini is an open-source model designed to handle multiple modalities such as text, audio, images, and videos. It utilizes a transformer architecture with special decoders for text and image generation. The model processes input sequences by transforming them into tokens and then decoding them to generate image outputs. Gemini differs from other models by directly feeding image embeddings into the transformer instead of using a visual transformer encoder. The model also includes a component called Codi for conditional generation. Gemini aims to effectively integrate image, audio, and video embeddings to enhance its performance.

Raga LLM Hub is a comprehensive evaluation toolkit for Language and Learning Models (LLMs) with over 100 meticulously designed metrics. It allows developers and organizations to evaluate and compare LLMs effectively, establishing guardrails for LLMs and Retrieval Augmented Generation (RAG) applications. The platform assesses aspects like Relevance & Understanding, Content Quality, Hallucination, Safety & Bias, Context Relevance, Guardrails, and Vulnerability scanning, along with Metric-Based Tests for quantitative analysis. It helps teams identify and fix issues throughout the LLM lifecycle, revolutionizing reliability and trustworthiness.

ProLLM is a framework that leverages Large Language Models to interpret and analyze protein sequences and interactions through natural language processing. It introduces the Protein Chain of Thought (ProCoT) method to transform complex protein interaction data into intuitive prompts, enhancing predictive accuracy by incorporating protein-specific embeddings and fine-tuning on domain-specific datasets.

TokenPacker is a novel visual projector that compresses visual tokens by 75%∼89% with high efficiency. It adopts a 'coarse-to-fine' scheme to generate condensed visual tokens, achieving comparable or better performance across diverse benchmarks. The tool includes TokenPacker for general use and TokenPacker-HD for high-resolution image understanding. It provides training scripts, checkpoints, and supports various compression ratios and patch numbers.

Macaw-LLM is a pioneering multi-modal language modeling tool that seamlessly integrates image, audio, video, and text data. It builds upon CLIP, Whisper, and LLaMA models to process and analyze multi-modal information effectively. The tool boasts features like simple and fast alignment, one-stage instruction fine-tuning, and a new multi-modal instruction dataset. It enables users to align multi-modal features efficiently, encode instructions, and generate responses across different data types.

Generative-AI-Drug-Discovery is a public repository on GitHub focused on using tensor network machine learning approaches to accelerate GenAI for drug discovery. The repository aims to implement effective architectures and methodologies into Large Language Models (LLMs) to enhance Drug Discovery Generative AI performance.

AI2BMD is a program for efficiently simulating protein molecular dynamics with ab initio accuracy. The repository contains datasets, simulation programs, and public materials related to AI2BMD. It provides a Docker image for easy deployment and a standalone launcher program. Users can run simulations by downloading the launcher script and specifying simulation parameters. The repository also includes ready-to-use protein structures for testing. AI2BMD is designed for x86-64 GNU/Linux systems with recommended hardware specifications. The related research includes model architectures like ViSNet, Geoformer, and fine-grained force metrics for MLFF. Citation information and contact details for the AI2BMD Team are provided.

mercure DICOM Orchestrator is a flexible solution for routing and processing DICOM files. It offers a user-friendly web interface and extensive monitoring functions. Custom processing modules can be implemented as Docker containers. Written in Python, it uses the DCMTK toolkit for DICOM communication. It can be deployed as a single-server installation using Docker Compose or as a scalable cluster installation using Nomad. mercure consists of service modules for receiving, routing, processing, dispatching, cleaning, web interface, and central monitoring.

ProLLM is a framework that leverages Large Language Models to interpret and analyze protein sequences and interactions through natural language processing. It introduces the Protein Chain of Thought (ProCoT) method to transform complex protein interaction data into intuitive prompts, enhancing predictive accuracy by incorporating protein-specific embeddings and fine-tuning on domain-specific datasets.

Grand Challenge is a platform that provides access to large amounts of annotated training data, objective comparisons of state-of-the-art machine learning solutions, and clinical validation using real-world data. It assists researchers, data scientists, and clinicians in collaborating to develop robust machine learning solutions to problems in biomedical imaging.

This tool is designed to detect and classify Alzheimer's Disease using Deep Learning and Machine Learning algorithms on an early basis, which is further optimized using the Crow Search Algorithm (CSA). Alzheimer's is a fatal disease, and early detection is crucial for patients to predetermine their condition and prevent its progression. By analyzing MRI scanned images using Artificial Intelligence technology, this tool can classify patients who may or may not develop AD in the future. The CSA algorithm, combined with ML algorithms, has proven to be the most effective approach for this purpose.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.