ProLLM is a framework that leverages Large Language Models to interpret and analyze protein sequences and interactions through natural language processing. It introduces the Protein Chain of Thought (ProCoT) method to transform complex protein interaction data into intuitive prompts, enhancing predictive accuracy by incorporating protein-specific embeddings and fine-tuning on domain-specific datasets.

K2 (GeoLLaMA) is a large language model for geoscience, trained on geoscience literature and fine-tuned with knowledge-intensive instruction data. It outperforms baseline models on objective and subjective tasks. The repository provides K2 weights, core data of GeoSignal, GeoBench benchmark, and code for further pretraining and instruction tuning. The model is available on Hugging Face for use. The project aims to create larger and more powerful geoscience language models in the future.

Only Train Once (OTO) is an automatic, architecture-agnostic DNN training and compression framework that allows users to train a general DNN from scratch or a pretrained checkpoint to achieve high performance and slimmer architecture simultaneously in a one-shot manner without fine-tuning. The framework includes features for automatic structured pruning and erasing operators, as well as hybrid structured sparse optimizers for efficient model compression. OTO provides tools for pruning zero-invariant group partitioning, constructing pruned models, and visualizing pruning and erasing dependency graphs. It supports the HESSO optimizer and offers a sanity check for compliance testing on various DNNs. The repository also includes publications, installation instructions, quick start guides, and a roadmap for future enhancements and collaborations.

Reflection-Tuning is a project focused on improving the quality of instruction-tuning data through a reflection-based method. It introduces Selective Reflection-Tuning, where the student model can decide whether to accept the improvements made by the teacher model. The project aims to generate high-quality instruction-response pairs by defining specific criteria for the oracle model to follow and respond to. It also evaluates the efficacy and relevance of instruction-response pairs using the r-IFD metric. The project provides code for reflection and selection processes, along with data and model weights for both V1 and V2 methods.

FATE-LLM is a framework supporting federated learning for large and small language models. It promotes training efficiency of federated LLMs using Parameter-Efficient methods, protects the IP of LLMs using FedIPR, and ensures data privacy during training and inference through privacy-preserving mechanisms.

Sophia is an open-source TypeScript platform designed for autonomous AI agents and LLM based workflows. It aims to automate processes, review code, assist with refactorings, and support various integrations. The platform offers features like advanced autonomous agents, reasoning/planning inspired by Google's Self-Discover paper, memory and function call history, adaptive iterative planning, and more. Sophia supports multiple LLMs/services, CLI and web interface, human-in-the-loop interactions, flexible deployment options, observability with OpenTelemetry tracing, and specific agents for code editing, software engineering, and code review. It provides a flexible platform for the TypeScript community to expand and support various use cases and integrations.

Nous is an open-source TypeScript platform for autonomous AI agents and LLM based workflows. It aims to automate processes, support requests, review code, assist with refactorings, and more. The platform supports various integrations, multiple LLMs/services, CLI and web interface, human-in-the-loop interactions, flexible deployment options, observability with OpenTelemetry tracing, and specific agents for code editing, software engineering, and code review. It offers advanced features like reasoning/planning, memory and function call history, hierarchical task decomposition, and control-loop function calling options. Nous is designed to be a flexible platform for the TypeScript community to expand and support different use cases and integrations.

Raga LLM Hub is a comprehensive evaluation toolkit for Language and Learning Models (LLMs) with over 100 meticulously designed metrics. It allows developers and organizations to evaluate and compare LLMs effectively, establishing guardrails for LLMs and Retrieval Augmented Generation (RAG) applications. The platform assesses aspects like Relevance & Understanding, Content Quality, Hallucination, Safety & Bias, Context Relevance, Guardrails, and Vulnerability scanning, along with Metric-Based Tests for quantitative analysis. It helps teams identify and fix issues throughout the LLM lifecycle, revolutionizing reliability and trustworthiness.

Mooncake is a serving platform for Kimi, a leading LLM service provided by Moonshot AI. It features a KVCache-centric disaggregated architecture that separates prefill and decoding clusters, leveraging underutilized CPU, DRAM, and SSD resources of the GPU cluster. Mooncake's scheduler balances throughput and latency-related SLOs, with a prediction-based early rejection policy for highly overloaded scenarios. It excels in long-context scenarios, achieving up to a 525% increase in throughput while handling 75% more requests under real workloads.

ChatLaw is an open-source legal large language model tailored for Chinese legal scenarios. It aims to combine LLM and knowledge bases to provide solutions for legal scenarios. The models include ChatLaw-13B and ChatLaw-33B, trained on various legal texts to construct dialogue data. The project focuses on improving logical reasoning abilities and plans to train models with parameters exceeding 30B for better performance. The dataset consists of forum posts, news, legal texts, judicial interpretations, legal consultations, exam questions, and court judgments, cleaned and enhanced to create dialogue data. The tool is designed to assist in legal tasks requiring complex logical reasoning, with a focus on accuracy and reliability.

FinRobot is an open-source AI agent platform designed for financial applications using large language models. It transcends the scope of FinGPT, offering a comprehensive solution that integrates a diverse array of AI technologies. The platform's versatility and adaptability cater to the multifaceted needs of the financial industry. FinRobot's ecosystem is organized into four layers, including Financial AI Agents Layer, Financial LLMs Algorithms Layer, LLMOps and DataOps Layers, and Multi-source LLM Foundation Models Layer. The platform's agent workflow involves Perception, Brain, and Action modules to capture, process, and execute financial data and insights. The Smart Scheduler optimizes model diversity and selection for tasks, managed by components like Director Agent, Agent Registration, Agent Adaptor, and Task Manager. The tool provides a structured file organization with subfolders for agents, data sources, and functional modules, along with installation instructions and hands-on tutorials.

This repository, MMC, focuses on advancing multimodal chart understanding through large-scale instruction tuning. It introduces a dataset supporting various tasks and chart types, a benchmark for evaluating reasoning capabilities over charts, and an assistant achieving state-of-the-art performance on chart QA benchmarks. The repository provides data for chart-text alignment, benchmarking, and instruction tuning, along with existing datasets used in experiments. Additionally, it offers a Gradio demo for the MMCA model.

Vision-LLM-Alignment is a repository focused on implementing alignment training for visual large language models (LLMs), including SFT training, reward model training, and PPO/DPO training. It supports various model architectures and provides datasets for training. The repository also offers benchmark results and installation instructions for users.

LMCache is a serving engine extension designed to reduce time to first token (TTFT) and increase throughput, particularly in long-context scenarios. It stores key-value caches of reusable texts across different locations like GPU, CPU DRAM, and Local Disk, allowing the reuse of any text in any serving engine instance. By combining LMCache with vLLM, significant delay savings and GPU cycle reduction are achieved in various large language model (LLM) use cases, such as multi-round question answering and retrieval-augmented generation (RAG). LMCache provides integration with the latest vLLM version, offering both online serving and offline inference capabilities. It supports sharing key-value caches across multiple vLLM instances and aims to provide stable support for non-prefix key-value caches along with user and developer documentation.

InstructGraph is a framework designed to enhance large language models (LLMs) for graph-centric tasks by utilizing graph instruction tuning and preference alignment. The tool collects and decomposes 29 standard graph datasets into four groups, enabling LLMs to better understand and generate graph data. It introduces a structured format verbalizer to transform graph data into a code-like format, facilitating code understanding and generation. Additionally, it addresses hallucination problems in graph reasoning and generation through direct preference optimization (DPO). The tool aims to bridge the gap between textual LLMs and graph data, offering a comprehensive solution for graph-related tasks.

RLAIF-V is a novel framework that aligns MLLMs in a fully open-source paradigm for super GPT-4V trustworthiness. It maximally exploits open-source feedback from high-quality feedback data and online feedback learning algorithm. Notable features include achieving super GPT-4V trustworthiness in both generative and discriminative tasks, using high-quality generalizable feedback data to reduce hallucination of different MLLMs, and exhibiting better learning efficiency and higher performance through iterative alignment.

ProLLM is a framework that leverages Large Language Models to interpret and analyze protein sequences and interactions through natural language processing. It introduces the Protein Chain of Thought (ProCoT) method to transform complex protein interaction data into intuitive prompts, enhancing predictive accuracy by incorporating protein-specific embeddings and fine-tuning on domain-specific datasets.

TokenPacker is a novel visual projector that compresses visual tokens by 75%∼89% with high efficiency. It adopts a 'coarse-to-fine' scheme to generate condensed visual tokens, achieving comparable or better performance across diverse benchmarks. The tool includes TokenPacker for general use and TokenPacker-HD for high-resolution image understanding. It provides training scripts, checkpoints, and supports various compression ratios and patch numbers.

Macaw-LLM is a pioneering multi-modal language modeling tool that seamlessly integrates image, audio, video, and text data. It builds upon CLIP, Whisper, and LLaMA models to process and analyze multi-modal information effectively. The tool boasts features like simple and fast alignment, one-stage instruction fine-tuning, and a new multi-modal instruction dataset. It enables users to align multi-modal features efficiently, encode instructions, and generate responses across different data types.

Generative-AI-Drug-Discovery is a public repository on GitHub focused on using tensor network machine learning approaches to accelerate GenAI for drug discovery. The repository aims to implement effective architectures and methodologies into Large Language Models (LLMs) to enhance Drug Discovery Generative AI performance.

AI2BMD is a program for efficiently simulating protein molecular dynamics with ab initio accuracy. The repository contains datasets, simulation programs, and public materials related to AI2BMD. It provides a Docker image for easy deployment and a standalone launcher program. Users can run simulations by downloading the launcher script and specifying simulation parameters. The repository also includes ready-to-use protein structures for testing. AI2BMD is designed for x86-64 GNU/Linux systems with recommended hardware specifications. The related research includes model architectures like ViSNet, Geoformer, and fine-grained force metrics for MLFF. Citation information and contact details for the AI2BMD Team are provided.

mercure DICOM Orchestrator is a flexible solution for routing and processing DICOM files. It offers a user-friendly web interface and extensive monitoring functions. Custom processing modules can be implemented as Docker containers. Written in Python, it uses the DCMTK toolkit for DICOM communication. It can be deployed as a single-server installation using Docker Compose or as a scalable cluster installation using Nomad. mercure consists of service modules for receiving, routing, processing, dispatching, cleaning, web interface, and central monitoring.

ProLLM is a framework that leverages Large Language Models to interpret and analyze protein sequences and interactions through natural language processing. It introduces the Protein Chain of Thought (ProCoT) method to transform complex protein interaction data into intuitive prompts, enhancing predictive accuracy by incorporating protein-specific embeddings and fine-tuning on domain-specific datasets.

Grand Challenge is a platform that provides access to large amounts of annotated training data, objective comparisons of state-of-the-art machine learning solutions, and clinical validation using real-world data. It assists researchers, data scientists, and clinicians in collaborating to develop robust machine learning solutions to problems in biomedical imaging.

This tool is designed to detect and classify Alzheimer's Disease using Deep Learning and Machine Learning algorithms on an early basis, which is further optimized using the Crow Search Algorithm (CSA). Alzheimer's is a fatal disease, and early detection is crucial for patients to predetermine their condition and prevent its progression. By analyzing MRI scanned images using Artificial Intelligence technology, this tool can classify patients who may or may not develop AD in the future. The CSA algorithm, combined with ML algorithms, has proven to be the most effective approach for this purpose.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.