Best AI tools for< Preprocess Protein Datasets >

HappyML is an AI tool designed to assist users in machine learning tasks. It provides a user-friendly interface for running machine learning algorithms without the need for complex coding. With HappyML, users can easily build, train, and deploy machine learning models for various applications. The tool offers a range of features such as data preprocessing, model evaluation, hyperparameter tuning, and model deployment. HappyML simplifies the machine learning process, making it accessible to users with varying levels of expertise.

ProLLM is a framework that leverages Large Language Models to interpret and analyze protein sequences and interactions through natural language processing. It introduces the Protein Chain of Thought (ProCoT) method to transform complex protein interaction data into intuitive prompts, enhancing predictive accuracy by incorporating protein-specific embeddings and fine-tuning on domain-specific datasets.

PINNACLE is a flexible geometric deep learning approach that trains on contextualized protein interaction networks to generate context-aware protein representations. It provides protein representations split across various cell-type contexts from different tissues and organs. The tool can be fine-tuned to study the genomic effects of drugs and nominate promising protein targets and cell-type contexts for further investigation. PINNACLE exemplifies the paradigm of incorporating context-specific effects for studying biological systems, especially the impact of disease and therapeutics.

The Intel® AI Reference Models repository contains links to pre-trained models, sample scripts, best practices, and tutorials for popular open-source machine learning models optimized by Intel to run on Intel® Xeon® Scalable processors and Intel® Data Center GPUs. The purpose is to quickly replicate complete software environments showcasing the AI capabilities of Intel platforms. It includes optimizations for popular deep learning frameworks like TensorFlow and PyTorch, with additional plugins/extensions for improved performance. The repository is licensed under Apache License Version 2.0.

The Intel® AI Reference Models repository contains links to pre-trained models, sample scripts, best practices, and tutorials for popular open-source machine learning models optimized by Intel to run on Intel® Xeon® Scalable processors and Intel® Data Center GPUs. It aims to replicate the best-known performance of target model/dataset combinations in optimally-configured hardware environments. The repository will be deprecated upon the publication of v3.2.0 and will no longer be maintained or published.

LongRecipe is a tool designed for efficient long context generalization in large language models. It provides a recipe for extending the context window of language models while maintaining their original capabilities. The tool includes data preprocessing steps, model training stages, and a process for merging fine-tuned models to enhance foundational capabilities. Users can follow the provided commands and scripts to preprocess data, train models in multiple stages, and merge models effectively.

LLM4Decompile is an open-source large language model dedicated to decompilation of Linux x86_64 binaries, supporting GCC's O0 to O3 optimization levels. It focuses on assessing re-executability of decompiled code through HumanEval-Decompile benchmark. The tool includes models with sizes ranging from 1.3 billion to 33 billion parameters, available on Hugging Face. Users can preprocess C code into binary and assembly instructions, then decompile assembly instructions into C using LLM4Decompile. Ongoing efforts aim to expand capabilities to support more architectures and configurations, integrate with decompilation tools like Ghidra and Rizin, and enhance performance with larger training datasets.

The End-to-End LLM Bootcamp is a comprehensive training program that covers the entire process of developing and deploying large language models. Participants learn to preprocess datasets, train models, optimize performance using NVIDIA technologies, understand guardrail prompts, and deploy AI pipelines using Triton Inference Server. The bootcamp includes labs, challenges, and practical applications, with a total duration of approximately 7.5 hours. It is designed for individuals interested in working with advanced language models and AI technologies.

OAD is a powerful open-source tool for analyzing and visualizing data. It provides a user-friendly interface for exploring datasets, generating insights, and creating interactive visualizations. With OAD, users can easily import data from various sources, clean and preprocess data, perform statistical analysis, and create customizable visualizations to communicate findings effectively. Whether you are a data scientist, analyst, or researcher, OAD can help you streamline your data analysis workflow and uncover valuable insights from your data.

This repository contains the code for HOLD, a method that jointly reconstructs hands and objects from monocular videos without assuming a pre-scanned object template. It can reconstruct 3D geometries of novel objects and hands, enabling template-free bimanual hand-object reconstruction, textureless object interaction with hands, and multiple objects interaction with hands. The repository provides instructions to download in-the-wild videos from HOLD, preprocess and train on custom videos, a volumetric rendering framework, a generalized codebase for single and two hand interaction with objects, a viewer to interact with predictions, and code to evaluate and compare with HOLD in HO3D. The repository also includes documentation for setup, training, evaluation, visualization, preprocessing custom sequences, and using HOLD on ARCTIC.

RVC_CLI is a command line interface tool for retrieval-based voice conversion. It provides functionalities for installation, getting started, inference, training, UVR, additional features, and API integration. Users can perform tasks like single inference, batch inference, TTS inference, preprocess dataset, extract features, start training, generate index file, model extract, model information, model blender, launch TensorBoard, download models, audio analyzer, and prerequisites download. The tool is built on various projects like ContentVec, HIFIGAN, audio-slicer, python-audio-separator, RMVPE, FCPE, VITS, So-Vits-SVC, Harmonify, and others.

This repository, RLHF-Reward-Modeling, is dedicated to training reward models for DRL-based RLHF (PPO), Iterative SFT, and iterative DPO. It provides state-of-the-art performance in reward models with a base model size of up to 13B. The installation instructions involve setting up the environment and aligning the handbook. Dataset preparation requires preprocessing conversations into a standard format. The code can be run with Gemma-2b-it, and evaluation results can be obtained using provided datasets. The to-do list includes various reward models like Bradley-Terry, preference model, regression-based reward model, and multi-objective reward model. The repository is part of iterative rejection sampling fine-tuning and iterative DPO.

QANTA is a system and dataset for question answering tasks. It provides a script to download datasets, preprocesses questions, and matches them with Wikipedia pages. The system includes various datasets, training, dev, and test data in JSON and SQLite formats. Dependencies include Python 3.6, `click`, and NLTK models. Elastic Search 5.6 is needed for the Guesser component. Configuration is managed through environment variables and YAML files. QANTA supports multiple guesser implementations that can be enabled/disabled. Running QANTA involves using `cli.py` and Luigi pipelines. The system accesses raw Wikipedia dumps for data processing. The QANTA ID numbering scheme categorizes datasets based on events and competitions.

MathEval is a benchmark designed for evaluating the mathematical capabilities of large models. It includes over 20 evaluation datasets covering various mathematical domains with more than 30,000 math problems. The goal is to assess the performance of large models across different difficulty levels and mathematical subfields. MathEval serves as a reliable reference for comparing mathematical abilities among large models and offers guidance on enhancing their mathematical capabilities in the future.

This repository provides a tool to create an AI chatbot clone of yourself using your WhatsApp chats as training data. It utilizes the Torchtune library for finetuning and inference. The code includes preprocessing of WhatsApp chats, finetuning models, and chatting with the AI clone via a command-line interface. Supported models are Llama3-8B-Instruct and Mistral-7B-Instruct-v0.2. Hardware requirements include approximately 16 GB vRAM for QLoRa Llama3 finetuning with a 4k context length. The repository addresses common issues like adjusting parameters for training and preprocessing non-English chats.

Bert-VITS2 is a repository that provides a backbone with multilingual BERT for text-to-speech (TTS) applications. It offers an alternative to BV2/GSV projects and is inspired by the MassTTS project. Users can refer to the code to learn how to train models for TTS. The project is not maintained actively in the short term. It is not to be used for any purposes that violate the laws of the People's Republic of China, and strictly prohibits any political-related use.

LLoCO is a technique that learns documents offline through context compression and in-domain parameter-efficient finetuning using LoRA, which enables LLMs to handle long context efficiently.

Custom AI prompt generator node for ComfyUI. With this node, you can use text generation models to generate prompts. Before using, text generation model has to be trained with prompt dataset.

Open-DocLLM is an open-source project that addresses data extraction and processing challenges using OCR and LLM technologies. It consists of two main layers: OCR for reading document content and LLM for extracting specific content in a structured manner. The project offers a larger context window size compared to JP Morgan's DocLLM and integrates tools like Tesseract OCR and Mistral for efficient data analysis. Users can run the models on-premises using LLM studio or Ollama, and the project includes a FastAPI app for testing purposes.

Cog is an open-source tool that lets you package machine learning models in a standard, production-ready container. You can deploy your packaged model to your own infrastructure, or to Replicate.

Expert en optimisation de performance et traitement de données

InDesign scripting assistance with direct .jsx downloads