Aioli is a library for running genomics command-line tools in the browser using WebAssembly. It creates a single WebWorker to run all WebAssembly tools, shares a filesystem across modules, and efficiently mounts local files. The tool encapsulates each module for loading, does WebAssembly feature detection, and communicates with the WebWorker using the Comlink library. Users can deploy new releases and versions, and benefit from code reuse by porting existing C/C++/Rust/etc tools to WebAssembly for browser use.

LLMFlex is a python package designed for developing AI applications with local Large Language Models (LLMs). It provides classes to load LLM models, embedding models, and vector databases to create AI-powered solutions with prompt engineering and RAG techniques. The package supports multiple LLMs with different generation configurations, embedding toolkits, vector databases, chat memories, prompt templates, custom tools, and a chatbot frontend interface. Users can easily create LLMs, load embeddings toolkit, use tools, chat with models in a Streamlit web app, and serve an OpenAI API with a GGUF model. LLMFlex aims to offer a simple interface for developers to work with LLMs and build private AI solutions using local resources.

H2O LLM Studio is a framework and no-code GUI designed for fine-tuning state-of-the-art large language models (LLMs). With H2O LLM Studio, you can easily and effectively fine-tune LLMs without the need for any coding experience. The GUI is specially designed for large language models, and you can finetune any LLM using a large variety of hyperparameters. You can also use recent finetuning techniques such as Low-Rank Adaptation (LoRA) and 8-bit model training with a low memory footprint. Additionally, you can use Reinforcement Learning (RL) to finetune your model (experimental), use advanced evaluation metrics to judge generated answers by the model, track and compare your model performance visually, and easily export your model to the Hugging Face Hub and share it with the community.

Dir-assistant is a tool that allows users to interact with their current directory's files using local or API Language Models (LLMs). It supports various platforms and provides API support for major LLM APIs. Users can configure and customize their local LLMs and API LLMs using the tool. Dir-assistant also supports model downloads and configurations for efficient usage. It is designed to enhance file interaction and retrieval using advanced language models.

Züs is a high-performance cloud on a fast blockchain offering privacy and configurable uptime. It uses erasure code to distribute data between data and parity servers, allowing flexibility for IT managers to design for security and uptime. Users can easily share encrypted data with business partners through a proxy key sharing protocol. The ecosystem includes apps like Blimp for cloud migration, Vult for personal cloud storage, and Chalk for NFT artists. Other apps include Bolt for secure wallet and staking, Atlus for blockchain explorer, and Chimney for network participation. The QoS protocol challenges providers based on response time, while the privacy protocol enables secure data sharing. Züs supports hybrid and multi-cloud architectures, allowing users to improve regulatory compliance and security requirements.

The user interface (and the main server) of the simulator of aids and social benefits for young people. It is based on the free socio-fiscal simulator Openfisca.

Blockoli is a high-performance tool for code indexing, embedding generation, and semantic search tool for use with LLMs. It is built in Rust and uses the ASTerisk crate for semantic code parsing. Blockoli allows you to efficiently index, store, and search code blocks and their embeddings using vector similarity. Key features include indexing code blocks from a codebase, generating vector embeddings for code blocks using a pre-trained model, storing code blocks and their embeddings in a SQLite database, performing efficient similarity search on code blocks using vector embeddings, providing a REST API for easy integration with other tools and platforms, and being fast and memory-efficient due to its implementation in Rust.

AI Town is a virtual town where AI characters live, chat, and socialize. This project provides a deployable starter kit for building and customizing your own version of AI Town. It features a game engine, database, vector search, auth, text model, deployment, pixel art generation, background music generation, and local inference. You can customize your own simulation by creating characters and stories, updating spritesheets, changing the background, and modifying the background music.

python-sc2 is an easy-to-use library for writing AI Bots for StarCraft II in Python 3. It aims for simplicity and ease of use while providing both high and low level abstractions. The library covers only the raw scripted interface and intends to help new bot authors with added functions. Users can install the library using pip and need a StarCraft II executable to run bots. The API configuration options allow users to customize bot behavior and performance. The community provides support through Discord servers, and users can contribute to the project by creating new issues or pull requests following style guidelines.

This repository codifies the Airflow cluster that is deployed at workflow.telemetry.mozilla.org (behind SSO) and commonly referred to as "WTMO" or simply "Airflow". Some links relevant to users and developers of WTMO: * The `dags` directory in this repository contains some custom DAG definitions * Many of the DAGs registered with WTMO don't live in this repository, but are instead generated from ETL task definitions in bigquery-etl * The Data SRE team maintains a WTMO Developer Guide (behind SSO)

Redbox is a retrieval augmented generation (RAG) app that uses GenAI to chat with and summarise civil service documents. It increases organisational memory by indexing documents and can summarise reports read months ago, supplement them with current work, and produce a first draft that lets civil servants focus on what they do best. The project uses a microservice architecture with each microservice running in its own container defined by a Dockerfile. Dependencies are managed using Python Poetry. Contributions are welcome, and the project is licensed under the MIT License. Security measures are in place to ensure user data privacy and considerations are being made to make the core-api secure.

Ultravox is a fast multimodal Language Model (LLM) that can understand both text and human speech in real-time without the need for a separate Audio Speech Recognition (ASR) stage. By extending Meta's Llama 3 model with a multimodal projector, Ultravox converts audio directly into a high-dimensional space used by Llama 3, enabling quick responses and potential understanding of paralinguistic cues like timing and emotion in human speech. The current version (v0.3) has impressive speed metrics and aims for further enhancements. Ultravox currently converts audio to streaming text and plans to emit speech tokens for direct audio conversion. The tool is open for collaboration to enhance this functionality.

WARC-GPT is an experimental retrieval augmented generation pipeline for web archive collections. It allows users to interact with WARC files, extract text, generate text embeddings, visualize embeddings, and interact with a web UI and API. The tool is highly customizable, supporting various LLMs, providers, and embedding models. Users can configure the application using environment variables, ingest WARC files, start the server, and interact with the web UI and API to search for content and generate text completions. WARC-GPT is designed for exploration and experimentation in exploring web archives using AI.

Truss is a tool that simplifies the process of serving AI/ML models in production. It provides a consistent and easy-to-use interface for packaging, testing, and deploying models, regardless of the framework they were created with. Truss also includes a live reload server for fast feedback during development, and a batteries-included model serving environment that eliminates the need for Docker and Kubernetes configuration.

CoML (formerly MLCopilot) is an interactive coding assistant for data scientists and machine learning developers, empowered on large language models. It offers an out-of-the-box interactive natural language programming interface for data mining and machine learning tasks, integration with Jupyter lab and Jupyter notebook, and a built-in large knowledge base of machine learning to enhance the ability to solve complex tasks. The tool is designed to assist users in coding tasks related to data analysis and machine learning using natural language commands within Jupyter environments.

ai-digest is a CLI tool designed to aggregate your codebase into a single Markdown file for use with Claude Projects or custom ChatGPTs. It aggregates all files in the specified directory and subdirectories, ignores common build artifacts and configuration files, and provides options for whitespace removal and custom ignore patterns. The tool is useful for preparing codebases for AI analysis and assistance.

Aioli is a library for running genomics command-line tools in the browser using WebAssembly. It creates a single WebWorker to run all WebAssembly tools, shares a filesystem across modules, and efficiently mounts local files. The tool encapsulates each module for loading, does WebAssembly feature detection, and communicates with the WebWorker using the Comlink library. Users can deploy new releases and versions, and benefit from code reuse by porting existing C/C++/Rust/etc tools to WebAssembly for browser use.

NoLabs is an open-source biolab that provides easy access to state-of-the-art models for bio research. It supports various tasks, including drug discovery, protein analysis, and small molecule design. NoLabs aims to accelerate bio research by making inference models accessible to everyone.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

The Ersilia Model Hub is a unified platform of pre-trained AI/ML models dedicated to infectious and neglected disease research. It offers an open-source, low-code solution that provides seamless access to AI/ML models for drug discovery. Models housed in the hub come from two sources: published models from literature (with due third-party acknowledgment) and custom models developed by the Ersilia team or contributors.

OntoGPT is a Python package for extracting structured information from text using large language models, instruction prompts, and ontology-based grounding. It provides a command line interface and a minimal web app for easy usage. The tool has been evaluated on test data and is used in related projects like TALISMAN for gene set analysis. OntoGPT enables users to extract information from text by specifying relevant terms and provides the extracted objects as output.

BIA `bob` is a Jupyter-based assistant for interacting with data using large language models to generate Python code. It can utilize OpenAI's chatGPT, Google's Gemini, Helmholtz' blablador, and Ollama. Users need respective accounts to access these services. Bob can assist in code generation, bug fixing, code documentation, GPU-acceleration, and offers a no-code custom Jupyter Kernel. It provides example notebooks for various tasks like bio-image analysis, model selection, and bug fixing. Installation is recommended via conda/mamba environment. Custom endpoints like blablador and ollama can be used. Google Cloud AI API integration is also supported. The tool is extensible for Python libraries to enhance Bob's functionality.

Scientific Large Language Models (Sci-LLMs) is a repository that collects papers on scientific large language models, focusing on biology and chemistry domains. It includes textual, molecular, protein, and genomic languages, as well as multimodal language. The repository covers various large language models for tasks such as molecule property prediction, interaction prediction, protein sequence representation, protein sequence generation/design, DNA-protein interaction prediction, and RNA prediction. It also provides datasets and benchmarks for evaluating these models. The repository aims to facilitate research and development in the field of scientific language modeling.

Polaris establishes a novel, industry‑certified standard to foster the development of impactful methods in AI-based drug discovery. This library is a Python client to interact with the Polaris Hub. It allows you to download Polaris datasets and benchmarks, evaluate a custom method against a Polaris benchmark, and create and upload new datasets and benchmarks.

The 'awesome-AI4MolConformation-MD' repository focuses on protein conformations and molecular dynamics using generative artificial intelligence and deep learning. It provides resources, reviews, datasets, packages, and tools related to AI-driven molecular dynamics simulations. The repository covers a wide range of topics such as neural networks potentials, force fields, AI engines/frameworks, trajectory analysis, visualization tools, and various AI-based models for protein conformational sampling. It serves as a comprehensive guide for researchers and practitioners interested in leveraging AI for studying molecular structures and dynamics.