Best AI tools for< Genomic Data Analyst >

JADBio is an automated machine learning (AutoML) platform designed to accelerate biomarker discovery and drug development processes. It offers a no-code solution that automates the discovery of biomarkers and interprets their role based on research needs. JADBio can parse multi-omics data, including genomics, transcriptome, metagenome, proteome, metabolome, phenotype/clinical data, and images, enabling users to efficiently discover valuable insights. The platform is purpose-built for various conditions such as cancer, immune, endocrine, metabolic system, chronic diseases, aging, infectious diseases, and mental health, offering solutions for early biomarker discovery, drug repurposing, lead identification, compound optimization, trial monitoring, and response to treatment. JADBio is trusted by partners in precision health & medicine and is continuously evolving to disrupt drug discovery times and costs at all stages.

AIMLAPI.com is an AI tool that provides access to over 200 AI models through a single AI API. It offers a wide range of AI features for tasks such as chat, code, image generation, music generation, video, voice embedding, language, genomic models, and 3D generation. The platform ensures fast inference, top-tier serverless infrastructure, high data security, 99% uptime, and 24/7 support. Users can integrate AI features easily into their products and test API models in a sandbox environment before deployment.

Deep Genomics is a company that uses artificial intelligence (AI) to develop RNA therapies for genetic diseases. The company's AI platform is designed to identify novel targets and evaluate thousands of possibilities to identify the best therapeutic candidates. Deep Genomics is currently developing BigRNA+, which will expand the number of mechanisms and genetic variants the company can pursue.

ScienceCast is a platform that enhances scientific papers with interactive media, providing a unique way to explore and engage with research articles in various fields such as Biology, Computer Science, Economics, Electrical Engineering, Mathematics, Physics, and more. Users can access a wide range of featured casts, including topics like cancer biology, genomics, immunology, microbiology, molecular biology, biochemistry, and bioinformatics. The platform aims to make complex scientific information more accessible and engaging for researchers and enthusiasts alike.

LifeSciencesIntelligence is a comprehensive online platform that delivers the latest news, insights, and resources in the fields of life sciences, biotechnology, genetics/genomics, and pathology. It serves as a valuable hub for professionals, researchers, and industry experts to stay informed about cutting-edge advancements and emerging trends in these domains.

AIDE is a machine learning code generation agent that can generate solutions for machine learning tasks from natural language descriptions. It has the following features: 1. **Instruct with Natural Language**: Describe your problem or additional requirements and expert insights, all in natural language. 2. **Deliver Solution in Source Code**: AIDE will generate Python scripts for the **tested** machine learning pipeline. Enjoy full transparency, reproducibility, and the freedom to further improve the source code! 3. **Iterative Optimization**: AIDE iteratively runs, debugs, evaluates, and improves the ML code, all by itself. 4. **Visualization**: We also provide tools to visualize the solution tree produced by AIDE for a better understanding of its experimentation process. This gives you insights not only about what works but also what doesn't. AIDE has been benchmarked on over 60 Kaggle data science competitions and has demonstrated impressive performance, surpassing 50% of Kaggle participants on average. It is particularly well-suited for tasks that require complex data preprocessing, feature engineering, and model selection.

The 'machine-learning-research' repository is a comprehensive collection of resources related to mathematics, machine learning, deep learning, artificial intelligence, data science, and various scientific fields. It includes materials such as courses, tutorials, books, podcasts, communities, online courses, papers, and dissertations. The repository covers topics ranging from fundamental math skills to advanced machine learning concepts, with a focus on applications in healthcare, genetics, computational biology, precision health, and AI in science. It serves as a valuable resource for individuals interested in learning and researching in the fields of machine learning and related disciplines.

Aioli is a library for running genomics command-line tools in the browser using WebAssembly. It creates a single WebWorker to run all WebAssembly tools, shares a filesystem across modules, and efficiently mounts local files. The tool encapsulates each module for loading, does WebAssembly feature detection, and communicates with the WebWorker using the Comlink library. Users can deploy new releases and versions, and benefit from code reuse by porting existing C/C++/Rust/etc tools to WebAssembly for browser use.

At ZenML, we believe in the importance of annotation and labeling workflows in the machine learning lifecycle. This repository showcases a curated list of open-source data annotation and labeling tools that are actively maintained and fit for purpose. The tools cover various domains such as multi-modal, text, images, audio, video, time series, and other data types. Users can contribute to the list and discover tools for tasks like named entity recognition, data annotation for machine learning, image and video annotation, text classification, sequence labeling, object detection, and more. The repository aims to help users enhance their data-centric workflows by leveraging these tools.

2025-AI-College-Jobs is a repository containing a comprehensive list of AI/ML & Data Science jobs suitable for college students seeking internships or new graduate positions. The repository is regularly updated with positions posted within the last 120 days, featuring opportunities from various companies in the USA and internationally. The list includes positions in areas such as research scientist internships, quantitative research analyst roles, and other data science-related positions. The repository aims to provide a valuable resource for students looking to kickstart their careers in the field of artificial intelligence and machine learning.

DNAnalyzer is a nonprofit organization dedicated to revolutionizing DNA analysis through AI-powered tools. It aims to democratize access to DNA analysis for a deeper understanding of human health and disease. The tool provides innovative AI-powered analysis and interpretive tools to empower geneticists, physicians, and researchers to gain deep insights into DNA sequences, revolutionizing how we understand human health and disease.

Scientific Large Language Models (Sci-LLMs) is a repository that collects papers on scientific large language models, focusing on biology and chemistry domains. It includes textual, molecular, protein, and genomic languages, as well as multimodal language. The repository covers various large language models for tasks such as molecule property prediction, interaction prediction, protein sequence representation, protein sequence generation/design, DNA-protein interaction prediction, and RNA prediction. It also provides datasets and benchmarks for evaluating these models. The repository aims to facilitate research and development in the field of scientific language modeling.

Slideflow is a deep learning library for digital pathology, offering a user-friendly interface for model development. It is designed for medical researchers and AI enthusiasts, providing an accessible platform for developing state-of-the-art pathology models. Slideflow offers customizable training pipelines, robust slide processing and stain normalization toolkit, support for weakly-supervised or strongly-supervised labels, built-in foundation models, multiple-instance learning, self-supervised learning, generative adversarial networks, explainability tools, layer activation analysis tools, uncertainty quantification, interactive user interface for model deployment, and more. It supports both PyTorch and Tensorflow, with optional support for Libvips for slide reading. Slideflow can be installed via pip, Docker container, or from source, and includes non-commercial add-ons for additional tools and pretrained models. It allows users to create projects, extract tiles from slides, train models, and provides evaluation tools like heatmaps and mosaic maps.

Aiogoogle is an asynchronous Google API client that allows users to access various Google public APIs such as Google Calendar, Drive, Contacts, Gmail, Maps, Youtube, Translate, Sheets, Docs, Analytics, Books, Fitness, Genomics, Cloud Storage, Kubernetes Engine, and more. It simplifies the process of interacting with Google APIs by providing async capabilities.

The 'carrot' repository on GitHub provides a list of free and user-friendly ChatGPT mirror sites for easy access. The repository includes sponsored sites offering various GPT models and services. Users can find and share sites, report errors, and access stable and recommended sites for ChatGPT usage. The repository also includes a detailed list of ChatGPT sites, their features, and accessibility options, making it a valuable resource for ChatGPT users seeking free and unlimited GPT services.

PINNACLE is a flexible geometric deep learning approach that trains on contextualized protein interaction networks to generate context-aware protein representations. It provides protein representations split across various cell-type contexts from different tissues and organs. The tool can be fine-tuned to study the genomic effects of drugs and nominate promising protein targets and cell-type contexts for further investigation. PINNACLE exemplifies the paradigm of incorporating context-specific effects for studying biological systems, especially the impact of disease and therapeutics.

PaperQA is a minimal package for question and answering from PDFs or text files, providing very good answers with in-text citations. It uses OpenAI Embeddings to embed and search documents, and includes a process of embedding docs, queries, searching for top passages, creating summaries, using an LLM to re-score and select relevant summaries, putting summaries into prompt, and generating answers. The tool can be used to answer specific questions related to scientific research by leveraging citations and relevant passages from documents.

LlamaBot is a Pythonic bot interface to Large Language Models (LLMs), providing an easy way to experiment with LLMs in Jupyter notebooks and build Python apps utilizing LLMs. It supports all models available in LiteLLM. Users can access LLMs either through local models with Ollama or by using API providers like OpenAI and Mistral. LlamaBot offers different bot interfaces like SimpleBot, ChatBot, QueryBot, and ImageBot for various tasks such as rephrasing text, maintaining chat history, querying documents, and generating images. The tool also includes CLI demos showcasing its capabilities and supports contributions for new features and bug reports from the community.

Genome Guide: Powered by OpenAI - A leader in genomic data analysis.

Academic-level genomics expertise.

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Expert in genomics, AI, and medical tech, explaining complex concepts simply.

Advanced Mycological Genomic Analysis Expert

Explores genomics and AI in sports medicine and performance.