DNAnalyzer is a nonprofit organization dedicated to revolutionizing DNA analysis through AI-powered tools. It aims to democratize access to DNA analysis for a deeper understanding of human health and disease. The tool provides innovative AI-powered analysis and interpretive tools to empower geneticists, physicians, and researchers to gain deep insights into DNA sequences, revolutionizing how we understand human health and disease.

Merlin is a groundbreaking model capable of generating natural language responses intricately linked with object trajectories of multiple images. It excels in predicting and reasoning about future events based on initial observations, showcasing unprecedented capability in future prediction and reasoning. Merlin achieves state-of-the-art performance on the Future Reasoning Benchmark and multiple existing multimodal language models benchmarks, demonstrating powerful multi-modal general ability and foresight minds.

GrAIdient is a framework designed to enable the development of deep learning models using the internal GPU of a Mac. It provides access to the graph of layers, allowing for unique model design with greater understanding, control, and reproducibility. The goal is to challenge the understanding of deep learning models, transitioning from black box to white box models. Key features include direct access to layers, native Mac GPU support, Swift language implementation, gradient checking, PyTorch interoperability, and more. The documentation covers main concepts, architecture, and examples. GrAIdient is MIT licensed.

PulsarRPA is a high-performance, distributed, open-source Robotic Process Automation (RPA) framework designed to handle large-scale RPA tasks with ease. It provides a comprehensive solution for browser automation, web content understanding, and data extraction. PulsarRPA addresses challenges of browser automation and accurate web data extraction from complex and evolving websites. It incorporates innovative technologies like browser rendering, RPA, intelligent scraping, advanced DOM parsing, and distributed architecture to ensure efficient, accurate, and scalable web data extraction. The tool is open-source, customizable, and supports cutting-edge information extraction technology, making it a preferred solution for large-scale web data extraction.

Data Formulator is an AI-powered tool developed by Microsoft Research to help data analysts create rich visualizations iteratively. It combines user interface interactions with natural language inputs to simplify the process of describing chart designs while delegating data transformation to AI. Users can utilize features like blended UI and NL inputs, data threads for history navigation, and code inspection to create impressive visualizations. The tool supports local installation for customization and Codespaces for quick setup. Developers can build new data analysis tools on top of Data Formulator, and research papers are available for further reading.

CSGHub is an open source, trustworthy large model asset management platform that can assist users in governing the assets involved in the lifecycle of LLM and LLM applications (datasets, model files, codes, etc). With CSGHub, users can perform operations on LLM assets, including uploading, downloading, storing, verifying, and distributing, through Web interface, Git command line, or natural language Chatbot. Meanwhile, the platform provides microservice submodules and standardized OpenAPIs, which could be easily integrated with users' own systems. CSGHub is committed to bringing users an asset management platform that is natively designed for large models and can be deployed On-Premise for fully offline operation. CSGHub offers functionalities similar to a privatized Huggingface(on-premise Huggingface), managing LLM assets in a manner akin to how OpenStack Glance manages virtual machine images, Harbor manages container images, and Sonatype Nexus manages artifacts.

Llama-github is a powerful tool that helps retrieve relevant code snippets, issues, and repository information from GitHub based on queries. It empowers AI agents and developers to solve coding tasks efficiently. With features like intelligent GitHub retrieval, repository pool caching, LLM-powered question analysis, and comprehensive context generation, llama-github excels at providing valuable knowledge context for development needs. It supports asynchronous processing, flexible LLM integration, robust authentication options, and logging/error handling for smooth operations and troubleshooting. The vision is to seamlessly integrate with GitHub for AI-driven development solutions, while the roadmap focuses on empowering LLMs to automatically resolve complex coding tasks.

Wren Engine is a semantic engine designed to serve as the backbone of the semantic layer for LLMs. It simplifies the user experience by translating complex data structures into a business-friendly format, enabling end-users to interact with data using familiar terminology. The engine powers the semantic layer with advanced capabilities to define and manage modeling definitions, metadata, schema, data relationships, and logic behind calculations and aggregations through an analytics-as-code design approach. By leveraging Wren Engine, organizations can ensure a developer-friendly semantic layer that reflects nuanced data relationships and dynamics, facilitating more informed decision-making and strategic insights.

Parrot is a distributed serving system for LLM-based Applications, designed to efficiently serve LLM-based applications by adding Semantic Variable in the OpenAI-style API. It allows for horizontal scalability with multiple Engine instances running LLM models communicating with ServeCore. The system enables AI agents to interact with LLMs via natural language prompts for collaborative tasks.

KDB.AI is a time-based vector database that allows developers to build scalable, reliable, and real-time applications by providing advanced search, recommendation, and personalization for Generative AI applications. It supports multiple index types, distance metrics, top-N and metadata filtered retrieval, as well as Python and REST interfaces. The repository contains samples demonstrating various use-cases such as temporal similarity search, document search, image search, recommendation systems, sentiment analysis, and more. KDB.AI integrates with platforms like ChatGPT, Langchain, and LlamaIndex. The setup steps require Unix terminal, Python 3.8+, and pip installed. Users can install necessary Python packages and run Jupyter notebooks to interact with the samples.

CodeProject.AI Server is a standalone, self-hosted, fast, free, and open-source Artificial Intelligence microserver designed for any platform and language. It can be installed locally without the need for off-device or out-of-network data transfer, providing an easy-to-use solution for developers interested in AI programming. The server includes a HTTP REST API server, backend analysis services, and the source code, enabling users to perform various AI tasks locally without relying on external services or cloud computing. Current capabilities include object detection, face detection, scene recognition, sentiment analysis, and more, with ongoing feature expansions planned. The project aims to promote AI development, simplify AI implementation, focus on core use-cases, and leverage the expertise of the developer community.

Instruct2Act is a framework that utilizes Large Language Models to map multi-modal instructions to sequential actions for robotic manipulation tasks. It generates Python programs using the LLM model for perception, planning, and action. The framework leverages foundation models like SAM and CLIP to convert high-level instructions into policy codes, accommodating various instruction modalities and task demands. Instruct2Act has been validated on robotic tasks in tabletop manipulation domains, outperforming learning-based policies in several tasks.

AgentNetworkProtocol (ANP) aims to define how agents connect with each other, building an open, secure, and efficient collaboration network for billions of intelligent agents. It addresses challenges in interconnectivity, native interfaces, and efficient collaboration by providing protocol layers for identity and encrypted communication, meta-protocol negotiation, and application protocol management. The project is developing an open-source implementation available on GitHub, with a vision to become the HTTP of the Intelligent Agent Internet era and establish ANP as an industry standard through a standardization committee. Contact the author Gaowei Chang via email, Discord, website, or GitHub for contributions or inquiries.

agentUniverse is a framework for developing applications powered by multi-agent based on large language model. It provides essential components for building single agent and multi-agent collaboration mechanism for customizing collaboration patterns. Developers can easily construct multi-agent applications and share pattern practices from different fields. The framework includes pre-installed collaboration patterns like PEER and DOE for complex task breakdown and data-intensive tasks.

CodeFuse-muAgent is a Multi-Agent framework designed to streamline Standard Operating Procedure (SOP) orchestration for agents. It integrates toolkits, code libraries, knowledge bases, and sandbox environments for rapid construction of complex Multi-Agent interactive applications. The framework enables efficient execution and handling of multi-layered and multi-dimensional tasks.

DNAnalyzer is a nonprofit organization dedicated to revolutionizing DNA analysis through AI-powered tools. It aims to democratize access to DNA analysis for a deeper understanding of human health and disease. The tool provides innovative AI-powered analysis and interpretive tools to empower geneticists, physicians, and researchers to gain deep insights into DNA sequences, revolutionizing how we understand human health and disease.

NoLabs is an open-source biolab that provides easy access to state-of-the-art models for bio research. It supports various tasks, including drug discovery, protein analysis, and small molecule design. NoLabs aims to accelerate bio research by making inference models accessible to everyone.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

The Ersilia Model Hub is a unified platform of pre-trained AI/ML models dedicated to infectious and neglected disease research. It offers an open-source, low-code solution that provides seamless access to AI/ML models for drug discovery. Models housed in the hub come from two sources: published models from literature (with due third-party acknowledgment) and custom models developed by the Ersilia team or contributors.

OntoGPT is a Python package for extracting structured information from text using large language models, instruction prompts, and ontology-based grounding. It provides a command line interface and a minimal web app for easy usage. The tool has been evaluated on test data and is used in related projects like TALISMAN for gene set analysis. OntoGPT enables users to extract information from text by specifying relevant terms and provides the extracted objects as output.

BIA `bob` is a Jupyter-based assistant for interacting with data using large language models to generate Python code. It can utilize OpenAI's chatGPT, Google's Gemini, Helmholtz' blablador, and Ollama. Users need respective accounts to access these services. Bob can assist in code generation, bug fixing, code documentation, GPU-acceleration, and offers a no-code custom Jupyter Kernel. It provides example notebooks for various tasks like bio-image analysis, model selection, and bug fixing. Installation is recommended via conda/mamba environment. Custom endpoints like blablador and ollama can be used. Google Cloud AI API integration is also supported. The tool is extensible for Python libraries to enhance Bob's functionality.

Scientific Large Language Models (Sci-LLMs) is a repository that collects papers on scientific large language models, focusing on biology and chemistry domains. It includes textual, molecular, protein, and genomic languages, as well as multimodal language. The repository covers various large language models for tasks such as molecule property prediction, interaction prediction, protein sequence representation, protein sequence generation/design, DNA-protein interaction prediction, and RNA prediction. It also provides datasets and benchmarks for evaluating these models. The repository aims to facilitate research and development in the field of scientific language modeling.

Polaris establishes a novel, industry‑certified standard to foster the development of impactful methods in AI-based drug discovery. This library is a Python client to interact with the Polaris Hub. It allows you to download Polaris datasets and benchmarks, evaluate a custom method against a Polaris benchmark, and create and upload new datasets and benchmarks.

The 'awesome-AI4MolConformation-MD' repository focuses on protein conformations and molecular dynamics using generative artificial intelligence and deep learning. It provides resources, reviews, datasets, packages, and tools related to AI-driven molecular dynamics simulations. The repository covers a wide range of topics such as neural networks potentials, force fields, AI engines/frameworks, trajectory analysis, visualization tools, and various AI-based models for protein conformational sampling. It serves as a comprehensive guide for researchers and practitioners interested in leveraging AI for studying molecular structures and dynamics.