Medical_Image_Analysis

The Medical_Image_Analysis repository focuses on X-ray image-based medical report generation using large language models. It provides pre-trained models and benchmarks for CheXpert Plus dataset, context sample retrieval for X-ray report generation, and pre-training on high-definition X-ray images. The goal is to enhance diagnostic accuracy and reduce patient wait times by improving X-ray report generation through advanced AI techniques.

Macaw-LLM is a pioneering multi-modal language modeling tool that seamlessly integrates image, audio, video, and text data. It builds upon CLIP, Whisper, and LLaMA models to process and analyze multi-modal information effectively. The tool boasts features like simple and fast alignment, one-stage instruction fine-tuning, and a new multi-modal instruction dataset. It enables users to align multi-modal features efficiently, encode instructions, and generate responses across different data types.

Only Train Once (OTO) is an automatic, architecture-agnostic DNN training and compression framework that allows users to train a general DNN from scratch or a pretrained checkpoint to achieve high performance and slimmer architecture simultaneously in a one-shot manner without fine-tuning. The framework includes features for automatic structured pruning and erasing operators, as well as hybrid structured sparse optimizers for efficient model compression. OTO provides tools for pruning zero-invariant group partitioning, constructing pruned models, and visualizing pruning and erasing dependency graphs. It supports the HESSO optimizer and offers a sanity check for compliance testing on various DNNs. The repository also includes publications, installation instructions, quick start guides, and a roadmap for future enhancements and collaborations.

PyTorch Forecasting is a PyTorch-based package for time series forecasting with state-of-the-art network architectures. It offers a high-level API for training networks on pandas data frames and utilizes PyTorch Lightning for scalable training on GPUs and CPUs. The package aims to simplify time series forecasting with neural networks by providing a flexible API for professionals and default settings for beginners. It includes a timeseries dataset class, base model class, multiple neural network architectures, multi-horizon timeseries metrics, and hyperparameter tuning with optuna. PyTorch Forecasting is built on pytorch-lightning for easy training on various hardware configurations.

Agents 2.0 is a framework for training language agents using symbolic learning, inspired by connectionist learning for neural nets. It implements main components of connectionist learning like back-propagation and gradient-based weight update in the context of agent training using language-based loss, gradients, and weights. The framework supports optimizing multi-agent systems and allows multiple agents to take actions in one node.

Vision-LLM-Alignment is a repository focused on implementing alignment training for visual large language models (LLMs), including SFT training, reward model training, and PPO/DPO training. It supports various model architectures and provides datasets for training. The repository also offers benchmark results and installation instructions for users.

Llumnix is a cross-instance request scheduling layer built on top of LLM inference engines such as vLLM, providing optimized multi-instance serving performance with low latency, reduced time-to-first-token (TTFT) and queuing delays, reduced time-between-tokens (TBT) and preemption stalls, and high throughput. It achieves this through dynamic, fine-grained, KV-cache-aware scheduling, continuous rescheduling across instances, KV cache migration mechanism, and seamless integration with existing multi-instance deployment platforms. Llumnix is easy to use, fault-tolerant, elastic, and extensible to more inference engines and scheduling policies.

This repository is dedicated to the pruning of large language models (LLMs). It aims to serve as a comprehensive resource for researchers and practitioners interested in the efficient reduction of model size while maintaining or enhancing performance. The repository contains various papers, summaries, and links related to different pruning approaches for LLMs, along with author information and publication details. It covers a wide range of topics such as structured pruning, unstructured pruning, semi-structured pruning, and benchmarking methods. Researchers and practitioners can explore different pruning techniques, understand their implications, and access relevant resources for further study and implementation.

AI2BMD is a program for efficiently simulating protein molecular dynamics with ab initio accuracy. The repository contains datasets, simulation programs, and public materials related to AI2BMD. It provides a Docker image for easy deployment and a standalone launcher program. Users can run simulations by downloading the launcher script and specifying simulation parameters. The repository also includes ready-to-use protein structures for testing. AI2BMD is designed for x86-64 GNU/Linux systems with recommended hardware specifications. The related research includes model architectures like ViSNet, Geoformer, and fine-grained force metrics for MLFF. Citation information and contact details for the AI2BMD Team are provided.

This repository contains the training and inference code needed to replicate the winning solution to the AI Mathematical Olympiad - Progress Prize 1. It consists of fine-tuning DeepSeekMath-Base 7B, high-quality training datasets, a self-consistency decoding algorithm, and carefully chosen validation sets. The training methodology involves Chain of Thought (CoT) and Tool Integrated Reasoning (TIR) training stages. Two datasets, NuminaMath-CoT and NuminaMath-TIR, were used to fine-tune the models. The models were trained using open-source libraries like TRL, PyTorch, vLLM, and DeepSpeed. Post-training quantization to 8-bit precision was done to improve performance on Kaggle's T4 GPUs. The project structure includes scripts for training, quantization, and inference, along with necessary installation instructions and hardware/software specifications.

This repository contains self-trained single image super resolution (SISR) models. The models are trained on various datasets and use different network architectures. They can be used to upscale images by 2x, 4x, or 8x, and can handle various types of degradation, such as JPEG compression, noise, and blur. The models are provided as safetensors files, which can be loaded into a variety of deep learning frameworks, such as PyTorch and TensorFlow. The repository also includes a number of resources, such as examples, results, and a website where you can compare the outputs of different models.

Do-Not-Answer is an open-source dataset curated to evaluate Large Language Models' safety mechanisms at a low cost. It consists of prompts to which responsible language models do not answer. The dataset includes human annotations and model-based evaluation using a fine-tuned BERT-like evaluator. The dataset covers 61 specific harms and collects 939 instructions across five risk areas and 12 harm types. Response assessment is done for six models, categorizing responses into harmfulness and action categories. Both human and automatic evaluations show the safety of models across different risk areas. The dataset also includes a Chinese version with 1,014 questions for evaluating Chinese LLMs' risk perception and sensitivity to specific words and phrases.

MiniCheck is an efficient fact-checking tool designed to verify claims against grounding documents using large language models. It provides a sentence-level fact-checking model that can be used to evaluate the consistency of claims with the provided documents. MiniCheck offers different models, including Bespoke-MiniCheck-7B, which is the state-of-the-art and commercially usable. The tool enables users to fact-check multi-sentence claims by breaking them down into individual sentences for optimal performance. It also supports automatic prefix caching for faster inference when repeatedly fact-checking the same document with different claims.

K2 (GeoLLaMA) is a large language model for geoscience, trained on geoscience literature and fine-tuned with knowledge-intensive instruction data. It outperforms baseline models on objective and subjective tasks. The repository provides K2 weights, core data of GeoSignal, GeoBench benchmark, and code for further pretraining and instruction tuning. The model is available on Hugging Face for use. The project aims to create larger and more powerful geoscience language models in the future.

A set of tools to visualize and interact with sequences of 3D data with cross-platform support on Windows, Linux, and macOS. It provides a native Python interface for loading and displaying SMPL[-H/-X], MANO, FLAME, STAR, and SUPR sequences in an interactive viewer. Users can render 3D data on top of images, edit SMPL sequences and poses, export screenshots and videos, and utilize a high-performance ModernGL-based rendering pipeline. The tool is designed for easy use and hacking, with features like headless mode, remote mode, animatable camera paths, and a built-in extensible GUI.

The Synthetic-Voice-Detection-Vocoder-Artifacts repository provides the LibriSeVoc dataset containing self-vocoding samples created with six state-of-the-art vocoders to expose and exploit vocoder artifacts. It also introduces a new approach for detecting synthetic human voices by identifying signal artifacts left by neural vocoders and enhancing the RawNet2 baseline. The repository includes a paper and dataset for further reference and offers instructions for training the model and testing it in the wild.

PyLLMs is a minimal Python library designed to connect to various Language Model Models (LLMs) such as OpenAI, Anthropic, Google, AI21, Cohere, Aleph Alpha, and HuggingfaceHub. It provides a built-in model performance benchmark for fast prototyping and evaluating different models. Users can easily connect to top LLMs, get completions from multiple models simultaneously, and evaluate models on quality, speed, and cost. The library supports asynchronous completion, streaming from compatible models, and multi-model initialization for testing and comparison. Additionally, it offers features like passing chat history, system messages, counting tokens, and benchmarking models based on quality, speed, and cost.

A fine-tuning guide for both OpenAI and Open-Source Large Language Models on Azure. Fine-Tuning retrains an existing pre-trained LLM using example data, resulting in a new 'custom' fine-tuned LLM optimized for task-specific examples. Use cases include improving LLM performance on specific tasks and introducing information not well represented by the base LLM model. Suitable for cases where latency is critical, high accuracy is required, and clear evaluation metrics are available. Learning path includes labs for fine-tuning GPT and Llama2 models via Dashboards and Python SDK.

cellseg-models.pytorch is a Python library built upon PyTorch for 2D cell/nuclei instance segmentation models. It provides multi-task encoder-decoder architectures and post-processing methods for segmenting cell/nuclei instances. The library offers high-level API to define segmentation models, open-source datasets for training, flexibility to modify model components, sliding window inference, multi-GPU inference, benchmarking utilities, regularization techniques, and example notebooks for training and finetuning models with different backbones.

Awesome Mobile LLMs is a curated list of Large Language Models (LLMs) and related studies focused on mobile and embedded hardware. The repository includes information on various LLM models, deployment frameworks, benchmarking efforts, applications, multimodal LLMs, surveys on efficient LLMs, training LLMs on device, mobile-related use-cases, industry announcements, and related repositories. It aims to be a valuable resource for researchers, engineers, and practitioners interested in mobile LLMs.

The Medical_Image_Analysis repository focuses on X-ray image-based medical report generation using large language models. It provides pre-trained models and benchmarks for CheXpert Plus dataset, context sample retrieval for X-ray report generation, and pre-training on high-definition X-ray images. The goal is to enhance diagnostic accuracy and reduce patient wait times by improving X-ray report generation through advanced AI techniques.

The repository 'LLM-for-Healthcare' provides a comprehensive survey of large language models (LLMs) for healthcare, covering data, technology, applications, and accountability and ethics. It includes information on various LLM models, training data, evaluation methods, and computation costs. The repository also discusses tasks such as NER, text classification, question answering, dialogue systems, and generation of medical reports from images in the healthcare domain.

Taiyi (太一) is a bilingual large language model fine-tuned for diverse biomedical tasks. It aims to facilitate communication between healthcare professionals and patients, provide medical information, and assist in diagnosis, biomedical knowledge discovery, drug development, and personalized healthcare solutions. The model is based on the Qwen-7B-base model and has been fine-tuned using rich bilingual instruction data. It covers tasks such as question answering, biomedical dialogue, medical report generation, biomedical information extraction, machine translation, title generation, text classification, and text semantic similarity. The project also provides standardized data formats, model training details, model inference guidelines, and overall performance metrics across various BioNLP tasks.

Weave is a toolkit for developing Generative AI applications, built by Weights & Biases. With Weave, you can log and debug language model inputs, outputs, and traces; build rigorous, apples-to-apples evaluations for language model use cases; and organize all the information generated across the LLM workflow, from experimentation to evaluations to production. Weave aims to bring rigor, best-practices, and composability to the inherently experimental process of developing Generative AI software, without introducing cognitive overhead.

AgentCloud is an open-source platform that enables companies to build and deploy private LLM chat apps, empowering teams to securely interact with their data. It comprises three main components: Agent Backend, Webapp, and Vector Proxy. To run this project locally, clone the repository, install Docker, and start the services. The project is licensed under the GNU Affero General Public License, version 3 only. Contributions and feedback are welcome from the community.

This framework generates fuzz targets for real-world `C`/`C++` projects with various Large Language Models (LLM) and benchmarks them via the `OSS-Fuzz` platform. It manages to successfully leverage LLMs to generate valid fuzz targets (which generate non-zero coverage increase) for 160 C/C++ projects. The maximum line coverage increase is 29% from the existing human-written targets.

LLMStack is a no-code platform for building generative AI agents, workflows, and chatbots. It allows users to connect their own data, internal tools, and GPT-powered models without any coding experience. LLMStack can be deployed to the cloud or on-premise and can be accessed via HTTP API or triggered from Slack or Discord.

The VisionCraft API is a free API for using over 100 different AI models. From images to sound.

Kaito is an operator that automates the AI/ML inference model deployment in a Kubernetes cluster. It manages large model files using container images, avoids tuning deployment parameters to fit GPU hardware by providing preset configurations, auto-provisions GPU nodes based on model requirements, and hosts large model images in the public Microsoft Container Registry (MCR) if the license allows. Using Kaito, the workflow of onboarding large AI inference models in Kubernetes is largely simplified.

PyRIT is an open access automation framework designed to empower security professionals and ML engineers to red team foundation models and their applications. It automates AI Red Teaming tasks to allow operators to focus on more complicated and time-consuming tasks and can also identify security harms such as misuse (e.g., malware generation, jailbreaking), and privacy harms (e.g., identity theft). The goal is to allow researchers to have a baseline of how well their model and entire inference pipeline is doing against different harm categories and to be able to compare that baseline to future iterations of their model. This allows them to have empirical data on how well their model is doing today, and detect any degradation of performance based on future improvements.

The Azure-Analytics-and-AI-Engagement repository provides packaged Industry Scenario DREAM Demos with ARM templates (Containing a demo web application, Power BI reports, Synapse resources, AML Notebooks etc.) that can be deployed in a customer’s subscription using the CAPE tool within a matter of few hours. Partners can also deploy DREAM Demos in their own subscriptions using DPoC.