Best AI tools for< Reproducibility Of Experiments >

PubCompare is a powerful AI-powered tool that helps scientists search, compare, and evaluate experimental protocols. With over 40 million protocols in its database, PubCompare is the largest repository of trusted experimental protocols. PubCompare's AI-powered search features allow users to find similar protocols, highlight critical steps, and evaluate the reproducibility of protocols based on in-protocol citations. PubCompare is available from any computer and requires no download.

Weights & Biases is an AI tool that offers documentation, guides, tutorials, and support for using AI models in applications. The platform provides two main products: W&B Weave for integrating AI models into code and W&B Models for building custom AI models. Users can access features such as tracing, output evaluation, cost estimates, hyperparameter sweeps, model registry, and more. Weights & Biases aims to simplify the process of working with AI models and improving model reproducibility.

Union.ai is an infrastructure platform designed for AI, ML, and data workloads. It offers a scalable MLOps platform that optimizes resources, reduces costs, and fosters collaboration among team members. Union.ai provides features such as declarative infrastructure, data lineage tracking, accelerated datasets, and more to streamline AI orchestration on Kubernetes. It aims to simplify the management of AI, ML, and data workflows in production environments by addressing complexities and offering cost-effective strategies.

Papers With Code is an AI tool that provides access to the latest research papers in the field of Machine Learning, along with corresponding code implementations. It offers a platform for researchers and enthusiasts to stay updated on state-of-the-art datasets, methods, and trends in the ML domain. Users can explore a wide range of topics such as language modeling, image generation, virtual try-on, and more through the collection of papers and code available on the website.

Comet ML is an extensible, fully customizable machine learning platform that aims to move ML forward by supporting productivity, reproducibility, and collaboration. It integrates with existing infrastructure and tools to manage, visualize, and optimize models from training runs to production monitoring. Users can track and compare training runs, create a model registry, and monitor models in production all in one platform. Comet's platform can be run on any infrastructure, enabling users to reshape their ML workflow and bring their existing software and data stack.

HippoRAG is a novel retrieval augmented generation (RAG) framework inspired by the neurobiology of human long-term memory that enables Large Language Models (LLMs) to continuously integrate knowledge across external documents. It provides RAG systems with capabilities that usually require a costly and high-latency iterative LLM pipeline for only a fraction of the computational cost. The tool facilitates setting up retrieval corpus, indexing, and retrieval processes for LLMs, offering flexibility in choosing different online LLM APIs or offline LLM deployments through LangChain integration. Users can run retrieval on pre-defined queries or integrate directly with the HippoRAG API. The tool also supports reproducibility of experiments and provides data, baselines, and hyperparameter tuning scripts for research purposes.

AgentLab is an open, easy-to-use, and extensible framework designed to accelerate web agent research. It provides features for developing and evaluating agents on various benchmarks supported by BrowserGym. The framework allows for large-scale parallel agent experiments using ray, building blocks for creating agents over BrowserGym, and a unified LLM API for OpenRouter, OpenAI, Azure, or self-hosted using TGI. AgentLab also offers reproducibility features, a unified LeaderBoard, and supports multiple benchmarks like WebArena, WorkArena, WebLinx, VisualWebArena, AssistantBench, GAIA, Mind2Web-live, and MiniWoB.

DVC, or Data Version Control, is a command-line tool and VS Code extension that helps you develop reproducible machine learning projects. With DVC, you can version your data and models, iterate fast with lightweight pipelines, track experiments in your local Git repo, compare any data, code, parameters, model, or performance plots, and share experiments and automatically reproduce anyone's experiment.

This repository contains code for reproducing experiments on lie detection in black-box LLMs by asking unrelated questions. It includes Q/A datasets, prompts, and fine-tuning datasets for generating lies with language models. The lie detectors rely on asking binary 'elicitation questions' to diagnose whether the model has lied. The code covers generating lies from language models, training and testing lie detectors, and generalization experiments. It requires access to GPUs and OpenAI API calls for running experiments with open-source models. Results are stored in the repository for reproducibility.

ModernBERT is a repository focused on modernizing BERT through architecture changes and scaling. It introduces FlexBERT, a modular approach to encoder building blocks, and heavily relies on .yaml configuration files to build models. The codebase builds upon MosaicBERT and incorporates Flash Attention 2. The repository is used for pre-training and GLUE evaluations, with a focus on reproducibility and documentation. It provides a collaboration between Answer.AI, LightOn, and friends.

Pgx is a collection of GPU/TPU-accelerated parallel game simulators for reinforcement learning (RL). It provides JAX-native game simulators for various games like Backgammon, Chess, Shogi, and Go, offering super fast parallel execution on accelerators and beautiful visualization in SVG format. Pgx focuses on faster implementations while also being sufficiently general, allowing environments to be converted to the AEC API of PettingZoo for running Pgx environments through the PettingZoo API.

A repository that lists papers related to Large Language Model (LLM) based agents. The repository covers various topics including survey, planning, feedback & reflection, memory mechanism, role playing, game playing, tool usage & human-agent interaction, benchmark & evaluation, environment & platform, agent framework, multi-agent system, and agent fine-tuning. It provides a comprehensive collection of research papers on LLM-based agents, exploring different aspects of AI agent architectures and applications.

ReproModel is an open-source toolbox designed to boost AI research efficiency by enabling researchers to reproduce, compare, train, and test AI models faster. It provides standardized models, dataloaders, and processing procedures, allowing researchers to focus on new datasets and model development. With a no-code solution, users can access benchmark and SOTA models and datasets, utilize training visualizations, extract code for publication, and leverage an LLM-powered automated methodology description writer. The toolbox helps researchers modularize development, compare pipeline performance reproducibly, and reduce time for model development, computation, and writing. Future versions aim to facilitate building upon state-of-the-art research by loading previously published study IDs with verified code, experiments, and results stored in the system.

MLflow is a platform to streamline machine learning development, including tracking experiments, packaging code into reproducible runs, and sharing and deploying models. MLflow offers a set of lightweight APIs that can be used with any existing machine learning application or library (TensorFlow, PyTorch, XGBoost, etc), wherever you currently run ML code (e.g. in notebooks, standalone applications or the cloud). MLflow's current components are: * `MLflow Tracking `_: An API to log parameters, code, and results in machine learning experiments and compare them using an interactive UI. * `MLflow Projects `_: A code packaging format for reproducible runs using Conda and Docker, so you can share your ML code with others. * `MLflow Models `_: A model packaging format and tools that let you easily deploy the same model (from any ML library) to batch and real-time scoring on platforms such as Docker, Apache Spark, Azure ML and AWS SageMaker. * `MLflow Model Registry `_: A centralized model store, set of APIs, and UI, to collaboratively manage the full lifecycle of MLflow Models.

ClearML is a suite of tools designed to streamline the machine learning workflow. It includes an experiment manager, MLOps/LLMOps, data management, and model serving capabilities. ClearML is open-source and offers a free tier hosting option. It supports various ML/DL frameworks and integrates with Jupyter Notebook and PyCharm. ClearML provides extensive logging capabilities, including source control info, execution environment, hyper-parameters, and experiment outputs. It also offers automation features, such as remote job execution and pipeline creation. ClearML is designed to be easy to integrate, requiring only two lines of code to add to existing scripts. It aims to improve collaboration, visibility, and data transparency within ML teams.

ClearML is an auto-magical suite of tools designed to streamline AI workflows. It includes modules for experiment management, MLOps/LLMOps, data management, model serving, and more. ClearML offers features like experiment tracking, model serving, orchestration, and automation. It supports various ML/DL frameworks and integrates with Jupyter Notebook and PyCharm for remote debugging. ClearML aims to simplify collaboration, automate processes, and enhance visibility in AI projects.

CAMEL is an open-source library designed for the study of autonomous and communicative agents. We believe that studying these agents on a large scale offers valuable insights into their behaviors, capabilities, and potential risks. To facilitate research in this field, we implement and support various types of agents, tasks, prompts, models, and simulated environments.

moai is a PyTorch-based AI Model Development Kit (MDK) designed to improve data-driven model workflows, design, and understanding. It offers modularity via monads for model building blocks, reproducibility via configuration-based design, productivity via a data-driven domain modelling language (DML), extensibility via plugins, and understanding via inter-model performance and design aggregation. The tool provides specific integrated actions like play, train, evaluate, plot, diff, and reprod to support heavy data-driven workflows with analytics, knowledge extraction, and reproduction. moai relies on PyTorch, Lightning, Hydra, TorchServe, ONNX, Visdom, HiPlot, Kornia, Albumentations, and the wider open-source community for its functionalities.

This project focuses on implementing Sparse Autoencoders (SAEs) for mechanistic interpretability in Large Language Models (LLMs) like Llama 3.2-3B. The SAEs aim to untangle superimposed representations in LLMs into separate, interpretable features for each neuron activation. The project provides an end-to-end pipeline for capturing training data, training the SAEs, analyzing learned features, and verifying results experimentally. It includes comprehensive logging, visualization, and checkpointing of SAE training, interpretability analysis tools, and a pure PyTorch implementation of Llama 3.1/3.2 chat and text completion. The project is designed for scalability, efficiency, and maintainability.

AIQC is an open source Python package that provides a declarative API for end-to-end MLOps in order to make deep learning more accessible to researchers. It utilizes a SQLite object-relational model for machine learning objects and stacks standardized workflows for various analyses, data types, and libraries. The benefits include a 90% reduction in data wrangling, reproducibility, and no need to install and maintain application and database servers for experiment tracking. AIQC is pip-installable and provides a Dash-Plotly UI for real-time experiment tracking.