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AlphaFold3 is an implementation of the Alpha Fold 3 model in PyTorch for accurate structure prediction of biomolecular interactions. It includes modules for genetic diffusion and full model examples for forward pass computations. The tool allows users to generate random pair and single representations, operate on atomic coordinates, and perform structure predictions based on input tensors. The implementation also provides functionalities for training and evaluating the model.

This repository includes papers and blogs about Efficient Transformers, Length Extrapolation, Long Term Memory, Retrieval Augmented Generation(RAG), and Evaluation for Long Context Modeling.

Scientific Large Language Models (Sci-LLMs) is a repository that collects papers on scientific large language models, focusing on biology and chemistry domains. It includes textual, molecular, protein, and genomic languages, as well as multimodal language. The repository covers various large language models for tasks such as molecule property prediction, interaction prediction, protein sequence representation, protein sequence generation/design, DNA-protein interaction prediction, and RNA prediction. It also provides datasets and benchmarks for evaluating these models. The repository aims to facilitate research and development in the field of scientific language modeling.

The 'machine-learning-research' repository is a comprehensive collection of resources related to mathematics, machine learning, deep learning, artificial intelligence, data science, and various scientific fields. It includes materials such as courses, tutorials, books, podcasts, communities, online courses, papers, and dissertations. The repository covers topics ranging from fundamental math skills to advanced machine learning concepts, with a focus on applications in healthcare, genetics, computational biology, precision health, and AI in science. It serves as a valuable resource for individuals interested in learning and researching in the fields of machine learning and related disciplines.

LLM-Geo is an AI-powered geographic information system (GIS) that leverages Large Language Models (LLMs) for automatic spatial data collection, analysis, and visualization. By adopting LLM as the reasoning core, it addresses spatial problems with self-generating, self-organizing, self-verifying, self-executing, and self-growing capabilities. The tool aims to make spatial analysis easier, faster, and more accessible by reducing manual operation time and delivering accurate results through case studies. It uses GPT-4 API in a Python environment and advocates for further research and development in autonomous GIS.

cellseg-models.pytorch is a Python library built upon PyTorch for 2D cell/nuclei instance segmentation models. It provides multi-task encoder-decoder architectures and post-processing methods for segmenting cell/nuclei instances. The library offers high-level API to define segmentation models, open-source datasets for training, flexibility to modify model components, sliding window inference, multi-GPU inference, benchmarking utilities, regularization techniques, and example notebooks for training and finetuning models with different backbones.

The 'awesome-AI4MolConformation-MD' repository focuses on protein conformations and molecular dynamics using generative artificial intelligence and deep learning. It provides resources, reviews, datasets, packages, and tools related to AI-driven molecular dynamics simulations. The repository covers a wide range of topics such as neural networks potentials, force fields, AI engines/frameworks, trajectory analysis, visualization tools, and various AI-based models for protein conformational sampling. It serves as a comprehensive guide for researchers and practitioners interested in leveraging AI for studying molecular structures and dynamics.

VLMEvalKit is an open-source evaluation toolkit of large vision-language models (LVLMs). It enables one-command evaluation of LVLMs on various benchmarks, without the heavy workload of data preparation under multiple repositories. In VLMEvalKit, we adopt generation-based evaluation for all LVLMs, and provide the evaluation results obtained with both exact matching and LLM-based answer extraction.

Black Marlin is a UCI compliant chess engine fully written in Rust by Doruk Sekercioglu. It supports Chess960 and features a variety of search algorithms, pruning techniques, and evaluation methods. Black Marlin is designed to be efficient and accurate, and it has been shown to perform well against other top chess engines.

Neptune is a scalable experiment tracker for teams training foundation models. Log millions of runs, effortlessly monitor and visualize model training, and deploy on your infrastructure. Track 100% of metadata to accelerate AI breakthroughs. Log and display any framework and metadata type from any ML pipeline. Organize experiments with nested structures and custom dashboards. Compare results, visualize training, and optimize models quicker. Version models, review stages, and access production-ready models. Share results, manage users, and projects. Integrate with 25+ frameworks. Trusted by great companies to improve workflow.

SuperDuperDB is a Python framework for integrating AI models, APIs, and vector search engines directly with your existing databases, including hosting of your own models, streaming inference and scalable model training/fine-tuning. Build, deploy and manage any AI application without the need for complex pipelines, infrastructure as well as specialized vector databases, and moving our data there, by integrating AI at your data's source: - Generative AI, LLMs, RAG, vector search - Standard machine learning use-cases (classification, segmentation, regression, forecasting recommendation etc.) - Custom AI use-cases involving specialized models - Even the most complex applications/workflows in which different models work together SuperDuperDB is **not** a database. Think `db = superduper(db)`: SuperDuperDB transforms your databases into an intelligent platform that allows you to leverage the full AI and Python ecosystem. A single development and deployment environment for all your AI applications in one place, fully scalable and easy to manage.

Smart Connections is an AI-powered plugin for Obsidian that helps you discover hidden connections and insights in your notes. With features like Smart View for real-time relevant note suggestions and Smart Chat for chatting with your notes, Smart Connections makes it easier than ever to stay organized and uncover hidden connections between your notes. Its intuitive interface and customizable settings ensure a seamless experience, tailored to your unique needs and preferences.

AIO Launcher Scripts is a collection of Lua scripts that can be used with AIO Launcher to enhance its functionality. These scripts can be used to create widget scripts, search scripts, and side menu scripts. They provide various functions such as displaying text, buttons, progress bars, charts, and interacting with app widgets. The scripts can be used to customize the appearance and behavior of the launcher, add new features, and interact with external services.

Minic is a chess engine developed for learning about chess programming and modern C++. It is compatible with CECP and UCI protocols, making it usable in various software. Minic has evolved from a one-file code to a more classic C++ style, incorporating features like evaluation tuning, perft, tests, and more. It has integrated NNUE frameworks from Stockfish and Seer implementations to enhance its strength. Minic is currently ranked among the top engines with an Elo rating around 3400 at CCRL scale.

Teaches origami with step-by-step visual instructions and provides templates for various skill levels.

Exactly like "Laundry Buddy", but evil 😈