Best AI tools for< Genome Engineering >

neurons.bio is an AI application that offers a unique collection of over 100 AI agents designed for drug development, medicine, and life science research. These agents perform specific tasks efficiently, retrieve data from various sources, and provide insights to accelerate research processes. The platform aims to revolutionize drug discovery and development by integrating cutting-edge LLM technology with domain-specific agents, reducing research costs and time to clinic.

OpenCRISPR is a set of free and open gene editing systems designed by Profluent Bio. The OpenCRISPR-1 protein maintains the prototypical architecture of a Type II Cas9 nuclease but is hundreds of mutations away from SpCas9 or any other known natural CRISPR-associated protein. You can view OpenCRISPR-1 as a drop-in replacement for many protocols that need a cas9-like protein with an NGG PAM and you can even use it with canonical SpCas9 gRNAs. OpenCRISPR-1 can be fused in a deactivated or nickase format for next generation gene editing techniques like base, prime, or epigenome editing.

LLM4EC is an interdisciplinary research repository focusing on the intersection of Large Language Models (LLM) and Evolutionary Computation (EC). It provides a comprehensive collection of papers and resources exploring various applications, enhancements, and synergies between LLM and EC. The repository covers topics such as LLM-assisted optimization, EA-based LLM architecture search, and applications in code generation, software engineering, neural architecture search, and other generative tasks. The goal is to facilitate research and development in leveraging LLM and EC for innovative solutions in diverse domains.

The 'machine-learning-research' repository is a comprehensive collection of resources related to mathematics, machine learning, deep learning, artificial intelligence, data science, and various scientific fields. It includes materials such as courses, tutorials, books, podcasts, communities, online courses, papers, and dissertations. The repository covers topics ranging from fundamental math skills to advanced machine learning concepts, with a focus on applications in healthcare, genetics, computational biology, precision health, and AI in science. It serves as a valuable resource for individuals interested in learning and researching in the fields of machine learning and related disciplines.

AI-resources is a repository containing links to various resources for learning Artificial Intelligence. It includes video lectures, courses, tutorials, and open-source libraries related to deep learning, reinforcement learning, machine learning, and more. The repository categorizes resources for beginners, average users, and advanced users/researchers, providing a comprehensive collection of materials to enhance knowledge and skills in AI.

日本語LLMの包括的な概要です。400ワード未満で、改行や引用符はありません。

Scientific Large Language Models (Sci-LLMs) is a repository that collects papers on scientific large language models, focusing on biology and chemistry domains. It includes textual, molecular, protein, and genomic languages, as well as multimodal language. The repository covers various large language models for tasks such as molecule property prediction, interaction prediction, protein sequence representation, protein sequence generation/design, DNA-protein interaction prediction, and RNA prediction. It also provides datasets and benchmarks for evaluating these models. The repository aims to facilitate research and development in the field of scientific language modeling.

At ZenML, we believe in the importance of annotation and labeling workflows in the machine learning lifecycle. This repository showcases a curated list of open-source data annotation and labeling tools that are actively maintained and fit for purpose. The tools cover various domains such as multi-modal, text, images, audio, video, time series, and other data types. Users can contribute to the list and discover tools for tasks like named entity recognition, data annotation for machine learning, image and video annotation, text classification, sequence labeling, object detection, and more. The repository aims to help users enhance their data-centric workflows by leveraging these tools.

SurveyX is an advanced academic survey automation system that leverages Large Language Models (LLMs) to generate high-quality, domain-specific academic papers and surveys. Users can request comprehensive academic papers or surveys tailored to specific topics by providing a paper title and keywords for literature retrieval. The system streamlines academic research by automating paper creation, saving users time and effort in compiling research content.

AirSane is a SANE frontend and scanner server that supports Apple's AirScan protocol. It automatically detects scanners and publishes them through mDNS. Acquired images can be transferred in JPEG, PNG, and PDF/raster format. The tool is intended to be used with AirScan/eSCL clients such as Apple's Image Capture, sane-airscan on Linux, and the eSCL client built into Windows 10 and 11. It provides a simple web interface and encodes images on-the-fly to keep memory/storage demands low, making it suitable for devices like Raspberry Pi. Authentication and secure communication are supported in conjunction with a proxy server like nginx. AirSane has been reverse-engineered from Apple's AirScanScanner client communication protocol and offers a range of installation and configuration options for different operating systems.

The 'llms-tools' repository is a comprehensive collection of AI tools, open-source projects, and research related to Large Language Models (LLMs) and Chatbots. It covers a wide range of topics such as AI in various domains, open-source models, chats & assistants, visual language models, evaluation tools, libraries, devices, income models, text-to-image, computer vision, audio & speech, code & math, games, robotics, typography, bio & med, military, climate, finance, and presentation. The repository provides valuable resources for researchers, developers, and enthusiasts interested in exploring the capabilities of LLMs and related technologies.

This repository provides training on large language models (LLMs) for genomics, including lecture notes and lab classes covering pretraining, finetuning, zeroshot learning prediction of mutation effect, synthetic DNA sequence generation, and DNA sequence optimization.

This repository contains a collection of tools that can be used with vastai. The tools are free to use, modify and distribute. If you find this useful and wish to donate your welcome to send your donations to the following wallets. BTC 15qkQSYXP2BvpqJkbj2qsNFb6nd7FyVcou XMR 897VkA8sG6gh7yvrKrtvWningikPteojfSgGff3JAUs3cu7jxPDjhiAZRdcQSYPE2VGFVHAdirHqRZEpZsWyPiNK6XPQKAg RVN RSgWs9Co8nQeyPqQAAqHkHhc5ykXyoMDUp USDT(ETH ERC20) 0xa5955cf9fe7af53bcaa1d2404e2b17a1f28aac4f Paypal PayPal.Me/cryptolabsZA

Groma is a grounded multimodal assistant that excels in region understanding and visual grounding. It can process user-defined region inputs and generate contextually grounded long-form responses. The tool presents a unique paradigm for multimodal large language models, focusing on visual tokenization for localization. Groma achieves state-of-the-art performance in referring expression comprehension benchmarks. The tool provides pretrained model weights and instructions for data preparation, training, inference, and evaluation. Users can customize training by starting from intermediate checkpoints. Groma is designed to handle tasks related to detection pretraining, alignment pretraining, instruction finetuning, instruction following, and more.

DNAnalyzer is a nonprofit organization dedicated to revolutionizing DNA analysis through AI-powered tools. It aims to democratize access to DNA analysis for a deeper understanding of human health and disease. The tool provides innovative AI-powered analysis and interpretive tools to empower geneticists, physicians, and researchers to gain deep insights into DNA sequences, revolutionizing how we understand human health and disease.

SharpNEAT is a complete implementation of NEAT written in C# and targeting .NET 9. It provides an implementation of an Evolutionary Algorithm (EA) with the specific goal of evolving a population of neural networks towards solving some goal problem task. The framework facilitates research into evolutionary computation and specifically evolution of neural networks, allowing for modular experimentation with genetic coding and evolutionary algorithms.

The lil brother of CF+ altering genomes without a license (not for the faint of heart)

Academic-level genomics expertise.

Genome Guide: Powered by OpenAI - A leader in genomic data analysis.

Explore, render, and ask questions about materials discovered in the GNoME project

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Advanced Mycological Genomic Analysis Expert