Open-Medical-Reasoning-Tasks
A comprehensive repository of reasoning tasks for Medical LLMs (and beyond)
Stars: 80
Open Life Science AI: Medical Reasoning Tasks is a collaborative hub for developing cutting-edge reasoning tasks for Large Language Models (LLMs) in the medical, healthcare, and clinical domains. The repository aims to advance AI capabilities in healthcare by fostering accurate diagnoses, personalized treatments, and improved patient outcomes. It offers a diverse range of medical reasoning challenges such as Diagnostic Reasoning, Treatment Planning, Medical Image Analysis, Clinical Data Interpretation, Patient History Analysis, Ethical Decision Making, Medical Literature Comprehension, and Drug Interaction Assessment. Contributors can join the community of healthcare professionals, AI researchers, and enthusiasts to contribute to the repository by creating new tasks or improvements following the provided guidelines. The repository also provides resources including a task list, evaluation metrics, medical AI papers, and healthcare datasets for training and evaluation.
README:
Advancing AI in Healthcare through Collaborative Task Development
Image Source: Can large language models reason about medical questions?
Welcome to the frontier of medical AI! This repository is a collaborative hub for developing cutting-edge reasoning tasks for Large Language Models (LLMs) in the medical, healthcare, and clinical domains.
Our Mission: To push the boundaries of AI capabilities in healthcare, fostering more accurate diagnoses, personalized treatments, and improved patient outcomes.
Explore our diverse range of medical reasoning challenges (Not limited to):
- Diagnostic Reasoning
- Treatment Planning
- Medical Image Analysis
- Clinical Data Interpretation
- Patient History Analysis
- Ethical Decision Making
- Medical Literature Comprehension
- Drug Interaction Assessment
- More to come
We believe in the power of collective intelligence. Join our community of healthcare professionals, AI researchers, and enthusiasts!
To contribute, please use GitHub and follow these guidelines. If you're not familiar with GitHub, don't worry! You can use this Google form to submit your tasks. Make sure to check the example provided to ensure all information is filled out correctly.
With Github:
- Fork this repository
- Create a new branch for your task or improvement
- Add your contribution following our guidelines
- Submit a pull request
Detailed instructions available in our Contribution Guide.
- π Task List: Comprehensive list of medical reasoning tasks
- π Evaluation Metrics: Assessing LLM performance in healthcare
- π Medical AI Papers: Curated list of groundbreaking research
- ποΈ Healthcare Datasets: High-quality data for training and evaluation
/
βββ π tasks/
β βββ π¬ diagnostic-reasoning/
β βββ π treatment-planning/
β βββ πΌοΈ medical-image-analysis/
β βββ ...
βββ π examples/
βββ π resources/
βββ π guidelines/
βββ π evaluation/
βββ π LICENSE
βββ π README.md
This project is licensed under the MIT License.
If our work contributes to your research, please cite us:
@misc{medicalreasoningtasks,
title = {Open Medical Reasoning Tasks: A Comprehensive Collection of LLM Reasoning Tasks in Healthcare},
author = {Pal, Ankit and Open Life Science AI team},
url = {https://github.com/OpenLifeScienceAI/Medical-Reasoning-Tasks},
year = {2024},
}
Join us in revolutionizing healthcare with AI!
For Tasks:
Click tags to check more tools for each tasksFor Jobs:
Alternative AI tools for Open-Medical-Reasoning-Tasks
Similar Open Source Tools
Open-Medical-Reasoning-Tasks
Open Life Science AI: Medical Reasoning Tasks is a collaborative hub for developing cutting-edge reasoning tasks for Large Language Models (LLMs) in the medical, healthcare, and clinical domains. The repository aims to advance AI capabilities in healthcare by fostering accurate diagnoses, personalized treatments, and improved patient outcomes. It offers a diverse range of medical reasoning challenges such as Diagnostic Reasoning, Treatment Planning, Medical Image Analysis, Clinical Data Interpretation, Patient History Analysis, Ethical Decision Making, Medical Literature Comprehension, and Drug Interaction Assessment. Contributors can join the community of healthcare professionals, AI researchers, and enthusiasts to contribute to the repository by creating new tasks or improvements following the provided guidelines. The repository also provides resources including a task list, evaluation metrics, medical AI papers, and healthcare datasets for training and evaluation.
edgeai
Embedded inference of Deep Learning models is quite challenging due to high compute requirements. TIβs Edge AI software product helps optimize and accelerate inference on TIβs embedded devices. It supports heterogeneous execution of DNNs across cortex-A based MPUs, TIβs latest generation C7x DSP, and DNN accelerator (MMA). The solution simplifies the product life cycle of DNN development and deployment by providing a rich set of tools and optimized libraries.
verl
veRL is a flexible and efficient reinforcement learning training framework designed for large language models (LLMs). It allows easy extension of diverse RL algorithms, seamless integration with existing LLM infrastructures, and flexible device mapping. The framework achieves state-of-the-art throughput and efficient actor model resharding with 3D-HybridEngine. It supports popular HuggingFace models and is suitable for users working with PyTorch FSDP, Megatron-LM, and vLLM backends.
kaizen
Kaizen is an open-source project that helps teams ensure quality in their software delivery by providing a suite of tools for code review, test generation, and end-to-end testing. It integrates with your existing code repositories and workflows, allowing you to streamline your software development process. Kaizen generates comprehensive end-to-end tests, provides UI testing and review, and automates code review with insightful feedback. The file structure includes components for API server, logic, actors, generators, LLM integrations, documentation, and sample code. Getting started involves installing the Kaizen package, generating tests for websites, and executing tests. The tool also runs an API server for GitHub App actions. Contributions are welcome under the AGPL License.
mindnlp
MindNLP is an open-source NLP library based on MindSpore. It provides a platform for solving natural language processing tasks, containing many common approaches in NLP. It can help researchers and developers to construct and train models more conveniently and rapidly. Key features of MindNLP include: * Comprehensive data processing: Several classical NLP datasets are packaged into a friendly module for easy use, such as Multi30k, SQuAD, CoNLL, etc. * Friendly NLP model toolset: MindNLP provides various configurable components. It is friendly to customize models using MindNLP. * Easy-to-use engine: MindNLP simplified complicated training process in MindSpore. It supports Trainer and Evaluator interfaces to train and evaluate models easily. MindNLP supports a wide range of NLP tasks, including: * Language modeling * Machine translation * Question answering * Sentiment analysis * Sequence labeling * Summarization MindNLP also supports industry-leading Large Language Models (LLMs), including Llama, GLM, RWKV, etc. For support related to large language models, including pre-training, fine-tuning, and inference demo examples, you can find them in the "llm" directory. To install MindNLP, you can either install it from Pypi, download the daily build wheel, or install it from source. The installation instructions are provided in the documentation. MindNLP is released under the Apache 2.0 license. If you find this project useful in your research, please consider citing the following paper: @misc{mindnlp2022, title={{MindNLP}: a MindSpore NLP library}, author={MindNLP Contributors}, howpublished = {\url{https://github.com/mindlab-ai/mindnlp}}, year={2022} }
UltraRAG
The UltraRAG framework is a researcher and developer-friendly RAG system solution that simplifies the process from data construction to model fine-tuning in domain adaptation. It introduces an automated knowledge adaptation technology system, supporting no-code programming, one-click synthesis and fine-tuning, multidimensional evaluation, and research-friendly exploration work integration. The architecture consists of Frontend, Service, and Backend components, offering flexibility in customization and optimization. Performance evaluation in the legal field shows improved results compared to VanillaRAG, with specific metrics provided. The repository is licensed under Apache-2.0 and encourages citation for support.
TaskingAI
TaskingAI brings Firebase's simplicity to **AI-native app development**. The platform enables the creation of GPTs-like multi-tenant applications using a wide range of LLMs from various providers. It features distinct, modular functions such as Inference, Retrieval, Assistant, and Tool, seamlessly integrated to enhance the development process. TaskingAIβs cohesive design ensures an efficient, intelligent, and user-friendly experience in AI application development.
docq
Docq is a private and secure GenAI tool designed to extract knowledge from business documents, enabling users to find answers independently. It allows data to stay within organizational boundaries, supports self-hosting with various cloud vendors, and offers multi-model and multi-modal capabilities. Docq is extensible, open-source (AGPLv3), and provides commercial licensing options. The tool aims to be a turnkey solution for organizations to adopt AI innovation safely, with plans for future features like more data ingestion options and model fine-tuning.
oat
Oat is a simple and efficient framework for running online LLM alignment algorithms. It implements a distributed Actor-Learner-Oracle architecture, with components optimized using state-of-the-art tools. Oat simplifies the experimental pipeline of LLM alignment by serving an Oracle online for preference data labeling and model evaluation. It provides a variety of oracles for simulating feedback and supports verifiable rewards. Oat's modular structure allows for easy inheritance and modification of classes, enabling rapid prototyping and experimentation with new algorithms. The framework implements cutting-edge online algorithms like PPO for math reasoning and various online exploration algorithms.
app
WebDB is a comprehensive and free database Integrated Development Environment (IDE) designed to maximize efficiency in database development and management. It simplifies and enhances database operations with features like DBMS discovery, query editor, time machine, NoSQL structure inferring, modern ERD visualization, and intelligent data generator. Developed with robust web technologies, WebDB is suitable for both novice and experienced database professionals.
Bobble-AI
AmbuFlow is a mobile application developed using HTML, CSS, JavaScript, and Google API to notify patients of nearby hospitals and provide estimated ambulance arrival times. It offers critical details like patient's location and enhances GPS route management with real-time traffic data for efficient navigation. The app helps users find nearby hospitals, track ambulances in real-time, and manage ambulance routes based on traffic and distance. It ensures quick emergency response, real-time tracking, enhanced communication, resource management, and a user-friendly interface for seamless navigation in high-stress situations.
generative-ai-workbook
Generative AI Workbook is a central repository for generative AI-related work, including projects, personal projects, and tools. It also features a blog section with bite-sized posts on various generative AI concepts. The repository covers use cases of Large Language Models (LLMs) such as search, classification, clustering, data/text/code generation, summarization, rewriting, extractions, proofreading, and querying data.
ai-data-science-team
The AI Data Science Team of Copilots is an AI-powered data science team that uses agents to help users perform common data science tasks 10X faster. It includes agents specializing in data cleaning, preparation, feature engineering, modeling, and interpretation of business problems. The project is a work in progress with new data science agents to be released soon. Disclaimer: This project is for educational purposes only and not intended to replace a company's data science team. No warranties or guarantees are provided, and the creator assumes no liability for financial loss.
DataDreamer
DataDreamer is a powerful open-source Python library designed for prompting, synthetic data generation, and training workflows. It is simple, efficient, and research-grade, allowing users to create prompting workflows, generate synthetic datasets, and train models with ease. The library is built for researchers, by researchers, focusing on correctness, best practices, and reproducibility. It offers features like aggressive caching, resumability, support for bleeding-edge techniques, and easy sharing of datasets and models. DataDreamer enables users to run multi-step prompting workflows, generate synthetic datasets for various tasks, and train models by aligning, fine-tuning, instruction-tuning, and distilling them using existing or synthetic data.
inngest
Inngest is a platform that offers durable functions to replace queues, state management, and scheduling for developers. It allows writing reliable step functions faster without dealing with infrastructure. Developers can create durable functions using various language SDKs, run a local development server, deploy functions to their infrastructure, sync functions with the Inngest Platform, and securely trigger functions via HTTPS. Inngest Functions support retrying, scheduling, and coordinating operations through triggers, flow control, and steps, enabling developers to build reliable workflows with robust support for various operations.
reComputer-Jetson-for-Beginners
The reComputer Jetson Orin Beginner Guide is a comprehensive resource designed to help developers explore and harness the powerful AI computing capabilities of the NVIDIA Jetson Orin platform. The guide covers a wide range of topics, from basic tools and getting started to advanced applications in computer vision, generative AI, robotics, and more. With step-by-step tutorials and hands-on projects, users can learn to master NVIDIA's core technologies and popular AI frameworks, enabling them to innovate in AI and robotics. The guide is suitable for beginners looking to dive into AI development and build cutting-edge projects with Jetson Orin.
For similar tasks
Open-Medical-Reasoning-Tasks
Open Life Science AI: Medical Reasoning Tasks is a collaborative hub for developing cutting-edge reasoning tasks for Large Language Models (LLMs) in the medical, healthcare, and clinical domains. The repository aims to advance AI capabilities in healthcare by fostering accurate diagnoses, personalized treatments, and improved patient outcomes. It offers a diverse range of medical reasoning challenges such as Diagnostic Reasoning, Treatment Planning, Medical Image Analysis, Clinical Data Interpretation, Patient History Analysis, Ethical Decision Making, Medical Literature Comprehension, and Drug Interaction Assessment. Contributors can join the community of healthcare professionals, AI researchers, and enthusiasts to contribute to the repository by creating new tasks or improvements following the provided guidelines. The repository also provides resources including a task list, evaluation metrics, medical AI papers, and healthcare datasets for training and evaluation.
For similar jobs
weave
Weave is a toolkit for developing Generative AI applications, built by Weights & Biases. With Weave, you can log and debug language model inputs, outputs, and traces; build rigorous, apples-to-apples evaluations for language model use cases; and organize all the information generated across the LLM workflow, from experimentation to evaluations to production. Weave aims to bring rigor, best-practices, and composability to the inherently experimental process of developing Generative AI software, without introducing cognitive overhead.
LLMStack
LLMStack is a no-code platform for building generative AI agents, workflows, and chatbots. It allows users to connect their own data, internal tools, and GPT-powered models without any coding experience. LLMStack can be deployed to the cloud or on-premise and can be accessed via HTTP API or triggered from Slack or Discord.
VisionCraft
The VisionCraft API is a free API for using over 100 different AI models. From images to sound.
kaito
Kaito is an operator that automates the AI/ML inference model deployment in a Kubernetes cluster. It manages large model files using container images, avoids tuning deployment parameters to fit GPU hardware by providing preset configurations, auto-provisions GPU nodes based on model requirements, and hosts large model images in the public Microsoft Container Registry (MCR) if the license allows. Using Kaito, the workflow of onboarding large AI inference models in Kubernetes is largely simplified.
PyRIT
PyRIT is an open access automation framework designed to empower security professionals and ML engineers to red team foundation models and their applications. It automates AI Red Teaming tasks to allow operators to focus on more complicated and time-consuming tasks and can also identify security harms such as misuse (e.g., malware generation, jailbreaking), and privacy harms (e.g., identity theft). The goal is to allow researchers to have a baseline of how well their model and entire inference pipeline is doing against different harm categories and to be able to compare that baseline to future iterations of their model. This allows them to have empirical data on how well their model is doing today, and detect any degradation of performance based on future improvements.
tabby
Tabby is a self-hosted AI coding assistant, offering an open-source and on-premises alternative to GitHub Copilot. It boasts several key features: * Self-contained, with no need for a DBMS or cloud service. * OpenAPI interface, easy to integrate with existing infrastructure (e.g Cloud IDE). * Supports consumer-grade GPUs.
spear
SPEAR (Simulator for Photorealistic Embodied AI Research) is a powerful tool for training embodied agents. It features 300 unique virtual indoor environments with 2,566 unique rooms and 17,234 unique objects that can be manipulated individually. Each environment is designed by a professional artist and features detailed geometry, photorealistic materials, and a unique floor plan and object layout. SPEAR is implemented as Unreal Engine assets and provides an OpenAI Gym interface for interacting with the environments via Python.
Magick
Magick is a groundbreaking visual AIDE (Artificial Intelligence Development Environment) for no-code data pipelines and multimodal agents. Magick can connect to other services and comes with nodes and templates well-suited for intelligent agents, chatbots, complex reasoning systems and realistic characters.