Open-Medical-Reasoning-Tasks
A comprehensive repository of reasoning tasks for Medical LLMs (and beyond)
Stars: 80
Open Life Science AI: Medical Reasoning Tasks is a collaborative hub for developing cutting-edge reasoning tasks for Large Language Models (LLMs) in the medical, healthcare, and clinical domains. The repository aims to advance AI capabilities in healthcare by fostering accurate diagnoses, personalized treatments, and improved patient outcomes. It offers a diverse range of medical reasoning challenges such as Diagnostic Reasoning, Treatment Planning, Medical Image Analysis, Clinical Data Interpretation, Patient History Analysis, Ethical Decision Making, Medical Literature Comprehension, and Drug Interaction Assessment. Contributors can join the community of healthcare professionals, AI researchers, and enthusiasts to contribute to the repository by creating new tasks or improvements following the provided guidelines. The repository also provides resources including a task list, evaluation metrics, medical AI papers, and healthcare datasets for training and evaluation.
README:
Advancing AI in Healthcare through Collaborative Task Development
Image Source: Can large language models reason about medical questions?
Welcome to the frontier of medical AI! This repository is a collaborative hub for developing cutting-edge reasoning tasks for Large Language Models (LLMs) in the medical, healthcare, and clinical domains.
Our Mission: To push the boundaries of AI capabilities in healthcare, fostering more accurate diagnoses, personalized treatments, and improved patient outcomes.
Explore our diverse range of medical reasoning challenges (Not limited to):
- Diagnostic Reasoning
- Treatment Planning
- Medical Image Analysis
- Clinical Data Interpretation
- Patient History Analysis
- Ethical Decision Making
- Medical Literature Comprehension
- Drug Interaction Assessment
- More to come
We believe in the power of collective intelligence. Join our community of healthcare professionals, AI researchers, and enthusiasts!
To contribute, please use GitHub and follow these guidelines. If you're not familiar with GitHub, don't worry! You can use this Google form to submit your tasks. Make sure to check the example provided to ensure all information is filled out correctly.
With Github:
- Fork this repository
- Create a new branch for your task or improvement
- Add your contribution following our guidelines
- Submit a pull request
Detailed instructions available in our Contribution Guide.
- π Task List: Comprehensive list of medical reasoning tasks
- π Evaluation Metrics: Assessing LLM performance in healthcare
- π Medical AI Papers: Curated list of groundbreaking research
- ποΈ Healthcare Datasets: High-quality data for training and evaluation
/
βββ π tasks/
β βββ π¬ diagnostic-reasoning/
β βββ π treatment-planning/
β βββ πΌοΈ medical-image-analysis/
β βββ ...
βββ π examples/
βββ π resources/
βββ π guidelines/
βββ π evaluation/
βββ π LICENSE
βββ π README.md
This project is licensed under the MIT License.
If our work contributes to your research, please cite us:
@misc{medicalreasoningtasks,
title = {Open Medical Reasoning Tasks: A Comprehensive Collection of LLM Reasoning Tasks in Healthcare},
author = {Pal, Ankit and Open Life Science AI team},
url = {https://github.com/OpenLifeScienceAI/Medical-Reasoning-Tasks},
year = {2024},
}
Join us in revolutionizing healthcare with AI!
For Tasks:
Click tags to check more tools for each tasksFor Jobs:
Alternative AI tools for Open-Medical-Reasoning-Tasks
Similar Open Source Tools
Open-Medical-Reasoning-Tasks
Open Life Science AI: Medical Reasoning Tasks is a collaborative hub for developing cutting-edge reasoning tasks for Large Language Models (LLMs) in the medical, healthcare, and clinical domains. The repository aims to advance AI capabilities in healthcare by fostering accurate diagnoses, personalized treatments, and improved patient outcomes. It offers a diverse range of medical reasoning challenges such as Diagnostic Reasoning, Treatment Planning, Medical Image Analysis, Clinical Data Interpretation, Patient History Analysis, Ethical Decision Making, Medical Literature Comprehension, and Drug Interaction Assessment. Contributors can join the community of healthcare professionals, AI researchers, and enthusiasts to contribute to the repository by creating new tasks or improvements following the provided guidelines. The repository also provides resources including a task list, evaluation metrics, medical AI papers, and healthcare datasets for training and evaluation.
edgeai
Embedded inference of Deep Learning models is quite challenging due to high compute requirements. TIβs Edge AI software product helps optimize and accelerate inference on TIβs embedded devices. It supports heterogeneous execution of DNNs across cortex-A based MPUs, TIβs latest generation C7x DSP, and DNN accelerator (MMA). The solution simplifies the product life cycle of DNN development and deployment by providing a rich set of tools and optimized libraries.
verl
veRL is a flexible and efficient reinforcement learning training framework designed for large language models (LLMs). It allows easy extension of diverse RL algorithms, seamless integration with existing LLM infrastructures, and flexible device mapping. The framework achieves state-of-the-art throughput and efficient actor model resharding with 3D-HybridEngine. It supports popular HuggingFace models and is suitable for users working with PyTorch FSDP, Megatron-LM, and vLLM backends.
midscene
Midscene.js is an AI-powered automation SDK that allows users to control web pages, perform assertions, and extract data in JSON format using natural language. It offers features such as natural language interaction, understanding UI and providing responses in JSON, intuitive assertion based on AI understanding, compatibility with public multimodal LLMs like GPT-4o, visualization tool for easy debugging, and a brand new experience in automation development.
kaizen
Kaizen is an open-source project that helps teams ensure quality in their software delivery by providing a suite of tools for code review, test generation, and end-to-end testing. It integrates with your existing code repositories and workflows, allowing you to streamline your software development process. Kaizen generates comprehensive end-to-end tests, provides UI testing and review, and automates code review with insightful feedback. The file structure includes components for API server, logic, actors, generators, LLM integrations, documentation, and sample code. Getting started involves installing the Kaizen package, generating tests for websites, and executing tests. The tool also runs an API server for GitHub App actions. Contributions are welcome under the AGPL License.
mindnlp
MindNLP is an open-source NLP library based on MindSpore. It provides a platform for solving natural language processing tasks, containing many common approaches in NLP. It can help researchers and developers to construct and train models more conveniently and rapidly. Key features of MindNLP include: * Comprehensive data processing: Several classical NLP datasets are packaged into a friendly module for easy use, such as Multi30k, SQuAD, CoNLL, etc. * Friendly NLP model toolset: MindNLP provides various configurable components. It is friendly to customize models using MindNLP. * Easy-to-use engine: MindNLP simplified complicated training process in MindSpore. It supports Trainer and Evaluator interfaces to train and evaluate models easily. MindNLP supports a wide range of NLP tasks, including: * Language modeling * Machine translation * Question answering * Sentiment analysis * Sequence labeling * Summarization MindNLP also supports industry-leading Large Language Models (LLMs), including Llama, GLM, RWKV, etc. For support related to large language models, including pre-training, fine-tuning, and inference demo examples, you can find them in the "llm" directory. To install MindNLP, you can either install it from Pypi, download the daily build wheel, or install it from source. The installation instructions are provided in the documentation. MindNLP is released under the Apache 2.0 license. If you find this project useful in your research, please consider citing the following paper: @misc{mindnlp2022, title={{MindNLP}: a MindSpore NLP library}, author={MindNLP Contributors}, howpublished = {\url{https://github.com/mindlab-ai/mindnlp}}, year={2022} }
software-dev-prompt-library
A collection of AI-powered prompts designed to streamline software development workflows. The library contains prompts at various stages of development, with structured sequences of connected prompts, project initialization support, development assistance, and documentation generation. It aims to provide consistent guidance across different development phases, promote systematic development processes, and enable progress tracking and validation.
deepflow
DeepFlow is an open-source project that provides deep observability for complex cloud-native and AI applications. It offers Zero Code data collection with eBPF for metrics, distributed tracing, request logs, and function profiling. DeepFlow is integrated with SmartEncoding to achieve Full Stack correlation and efficient access to all observability data. With DeepFlow, cloud-native and AI applications automatically gain deep observability, removing the burden of developers continually instrumenting code and providing monitoring and diagnostic capabilities covering everything from code to infrastructure for DevOps/SRE teams.
Reflection_Tuning
Reflection-Tuning is a project focused on improving the quality of instruction-tuning data through a reflection-based method. It introduces Selective Reflection-Tuning, where the student model can decide whether to accept the improvements made by the teacher model. The project aims to generate high-quality instruction-response pairs by defining specific criteria for the oracle model to follow and respond to. It also evaluates the efficacy and relevance of instruction-response pairs using the r-IFD metric. The project provides code for reflection and selection processes, along with data and model weights for both V1 and V2 methods.
intro-llm-rag
This repository serves as a comprehensive guide for technical teams interested in developing conversational AI solutions using Retrieval-Augmented Generation (RAG) techniques. It covers theoretical knowledge and practical code implementations, making it suitable for individuals with a basic technical background. The content includes information on large language models (LLMs), transformers, prompt engineering, embeddings, vector stores, and various other key concepts related to conversational AI. The repository also provides hands-on examples for two different use cases, along with implementation details and performance analysis.
app
WebDB is a comprehensive and free database Integrated Development Environment (IDE) designed to maximize efficiency in database development and management. It simplifies and enhances database operations with features like DBMS discovery, query editor, time machine, NoSQL structure inferring, modern ERD visualization, and intelligent data generator. Developed with robust web technologies, WebDB is suitable for both novice and experienced database professionals.
Bobble-AI
AmbuFlow is a mobile application developed using HTML, CSS, JavaScript, and Google API to notify patients of nearby hospitals and provide estimated ambulance arrival times. It offers critical details like patient's location and enhances GPS route management with real-time traffic data for efficient navigation. The app helps users find nearby hospitals, track ambulances in real-time, and manage ambulance routes based on traffic and distance. It ensures quick emergency response, real-time tracking, enhanced communication, resource management, and a user-friendly interface for seamless navigation in high-stress situations.
generative-ai-workbook
Generative AI Workbook is a central repository for generative AI-related work, including projects, personal projects, and tools. It also features a blog section with bite-sized posts on various generative AI concepts. The repository covers use cases of Large Language Models (LLMs) such as search, classification, clustering, data/text/code generation, summarization, rewriting, extractions, proofreading, and querying data.
ChatFAQ
ChatFAQ is an open-source comprehensive platform for creating a wide variety of chatbots: generic ones, business-trained, or even capable of redirecting requests to human operators. It includes a specialized NLP/NLG engine based on a RAG architecture and customized chat widgets, ensuring a tailored experience for users and avoiding vendor lock-in.
DataDreamer
DataDreamer is a powerful open-source Python library designed for prompting, synthetic data generation, and training workflows. It is simple, efficient, and research-grade, allowing users to create prompting workflows, generate synthetic datasets, and train models with ease. The library is built for researchers, by researchers, focusing on correctness, best practices, and reproducibility. It offers features like aggressive caching, resumability, support for bleeding-edge techniques, and easy sharing of datasets and models. DataDreamer enables users to run multi-step prompting workflows, generate synthetic datasets for various tasks, and train models by aligning, fine-tuning, instruction-tuning, and distilling them using existing or synthetic data.
For similar tasks
Open-Medical-Reasoning-Tasks
Open Life Science AI: Medical Reasoning Tasks is a collaborative hub for developing cutting-edge reasoning tasks for Large Language Models (LLMs) in the medical, healthcare, and clinical domains. The repository aims to advance AI capabilities in healthcare by fostering accurate diagnoses, personalized treatments, and improved patient outcomes. It offers a diverse range of medical reasoning challenges such as Diagnostic Reasoning, Treatment Planning, Medical Image Analysis, Clinical Data Interpretation, Patient History Analysis, Ethical Decision Making, Medical Literature Comprehension, and Drug Interaction Assessment. Contributors can join the community of healthcare professionals, AI researchers, and enthusiasts to contribute to the repository by creating new tasks or improvements following the provided guidelines. The repository also provides resources including a task list, evaluation metrics, medical AI papers, and healthcare datasets for training and evaluation.
For similar jobs
weave
Weave is a toolkit for developing Generative AI applications, built by Weights & Biases. With Weave, you can log and debug language model inputs, outputs, and traces; build rigorous, apples-to-apples evaluations for language model use cases; and organize all the information generated across the LLM workflow, from experimentation to evaluations to production. Weave aims to bring rigor, best-practices, and composability to the inherently experimental process of developing Generative AI software, without introducing cognitive overhead.
LLMStack
LLMStack is a no-code platform for building generative AI agents, workflows, and chatbots. It allows users to connect their own data, internal tools, and GPT-powered models without any coding experience. LLMStack can be deployed to the cloud or on-premise and can be accessed via HTTP API or triggered from Slack or Discord.
VisionCraft
The VisionCraft API is a free API for using over 100 different AI models. From images to sound.
kaito
Kaito is an operator that automates the AI/ML inference model deployment in a Kubernetes cluster. It manages large model files using container images, avoids tuning deployment parameters to fit GPU hardware by providing preset configurations, auto-provisions GPU nodes based on model requirements, and hosts large model images in the public Microsoft Container Registry (MCR) if the license allows. Using Kaito, the workflow of onboarding large AI inference models in Kubernetes is largely simplified.
PyRIT
PyRIT is an open access automation framework designed to empower security professionals and ML engineers to red team foundation models and their applications. It automates AI Red Teaming tasks to allow operators to focus on more complicated and time-consuming tasks and can also identify security harms such as misuse (e.g., malware generation, jailbreaking), and privacy harms (e.g., identity theft). The goal is to allow researchers to have a baseline of how well their model and entire inference pipeline is doing against different harm categories and to be able to compare that baseline to future iterations of their model. This allows them to have empirical data on how well their model is doing today, and detect any degradation of performance based on future improvements.
tabby
Tabby is a self-hosted AI coding assistant, offering an open-source and on-premises alternative to GitHub Copilot. It boasts several key features: * Self-contained, with no need for a DBMS or cloud service. * OpenAPI interface, easy to integrate with existing infrastructure (e.g Cloud IDE). * Supports consumer-grade GPUs.
spear
SPEAR (Simulator for Photorealistic Embodied AI Research) is a powerful tool for training embodied agents. It features 300 unique virtual indoor environments with 2,566 unique rooms and 17,234 unique objects that can be manipulated individually. Each environment is designed by a professional artist and features detailed geometry, photorealistic materials, and a unique floor plan and object layout. SPEAR is implemented as Unreal Engine assets and provides an OpenAI Gym interface for interacting with the environments via Python.
Magick
Magick is a groundbreaking visual AIDE (Artificial Intelligence Development Environment) for no-code data pipelines and multimodal agents. Magick can connect to other services and comes with nodes and templates well-suited for intelligent agents, chatbots, complex reasoning systems and realistic characters.