Best AI tools for< Engineer New Proteins >

The Institute for Protein Design is a research institute at the University of Washington that uses computational design to create new proteins that solve modern challenges in medicine, technology, and sustainability. The institute's research focuses on developing new protein therapeutics, vaccines, drug delivery systems, biological devices, self-assembling nanomaterials, and bioactive peptides. The institute also has a strong commitment to responsible AI development and has developed a set of principles to guide its use of AI in research.

Cradle is a protein engineering platform that uses machine learning to design improved protein sequences. It allows users to import assay data, generate new sequences, test them in the lab, and import the results to improve the model. Cradle can be used to optimize multiple properties of a protein simultaneously, and it has been used by leading biotech teams to accelerate new and ongoing projects.

New Relic is an AI monitoring platform that offers an all-in-one observability solution for monitoring, debugging, and improving the entire technology stack. With over 30 capabilities and 750+ integrations, New Relic provides the power of AI to help users gain insights and optimize performance across various aspects of their infrastructure, applications, and digital experiences.

Adept is building a machine learning model that can interact with everything on your computer. It takes your goals, in plain language, and turns them into actions on the software you use every day. Adept is designed and trained specifically for taking actions on computers in response to your natural language commands. ACT-1 is Adept's first step towards a foundation model that can use every software tool, API, and website that exists.

Cruise is a self-driving car company that is developing autonomous vehicles for ride-hailing and delivery services. The company's mission is to save lives, enhance access, and improve communities through driverless technology. Cruise is currently testing its vehicles in Phoenix, Arizona, and plans to launch commercial services in the near future.

Product Hunt is a website that allows users to discover and launch new tech products. It features a variety of products, including apps, websites, hardware, and more. Product Hunt also has a community of users who share their thoughts on new products and vote on their favorites. The site is a great way to find new and innovative products, as well as to get feedback on your own products.

Neural Concept is an end-to-end platform for high-performance engineering teams, powered by a leading proprietary 3D AI core. It accelerates product development and innovation with industry-leading 3D deep-learning and simulation capabilities. The platform works with various CAE and CAD softwares, offering 3D visual feedback, collaborative environment, and LLM guidance to boost engineers' impact. Neural Concept is used by engineering companies to design and deliver better products faster, bringing AI-designed products to market up to 75% faster.

Egen is an AI application that focuses on engineering new possibilities with platforms, data, and generative AI. The company empowers organizations and individuals by harnessing the power of data and platforms to drive impact and create a better future. Egen collaborates with clients across various industries to provide innovative solutions using cloud, data, AI, and platforms.

AI Music Generator is an advanced tool that allows users to create high-quality music compositions across various genres. It utilizes cutting-edge algorithms and machine learning techniques to analyze music patterns and styles, enabling users to generate personalized music aligned with their creative visions. The platform offers a free version with basic features and also provides advanced functionalities for commercial usage through subscription or payment. Users can customize instruments and sounds, share their creations on social media and music streaming services, and use AI-generated music for commercial purposes while complying with the platform's terms of use.

Razzle is a messaging tool designed to help you stay focused and get more done. It is minimal and distraction-free, with a focus mode that is on by default. Razzle also has a quick and easy search function from your command bar, and it comes with 2 embedded AI models that can help you with writing marketing copy or data extraction. Razzle also has first party support for Zoom and Google Meets, so you can easily call your colleagues with one click.

DocsHound is an AI automated documentation platform that revolutionizes knowledge base software by offering a purpose-built solution for the AI era. It simplifies the process of creating manuals by automating the output based on user input. With a focus on product managers, founders, engineers, writers, and customer success professionals, DocsHound provides a modular editing interface with a suite of AI features, efficient publishing workflow, on-brand styling options, and an adaptive AI engine calibrated to user interactions.

This website provides a weekly newsletter on generative AI, featuring new AI tools and deep dives into AI's impact on various industries. It aims to keep subscribers informed about the latest AI developments and inspire innovation.

Razzle is a messaging tool designed to help you stay focused and get more done. It is minimal and distraction-free, with a focus mode that is on by default. Razzle also has a quick and easy search function from your command bar, and it comes with 2 embedded AI models that can help you with writing marketing copy or data extraction. Razzle also has first party support for Zoom and Google Meets, so you can easily call your colleagues with one click.

Iambic Therapeutics is a cutting-edge AI-driven drug discovery platform that tackles the most challenging design problems in drug discovery, addressing unmet patient need. Its physics-based AI algorithms drive a high-throughput experimental platform, converting new molecular designs to new biological insights each week. Iambic's platform optimizes target product profiles, exploring multiple profiles in parallel to ensure that molecules are designed to solve the right problems in disease biology. It also optimizes drug candidates, deeply exploring chemical space to reveal novel mechanisms of action and deliver diverse high-quality leads.

IA Hispano is a platform that provides tools and resources for creating music. It offers a variety of features, including a music editor, a sound library, and a community forum. IA Hispano is designed to be easy to use, even for beginners, and it provides a great way to learn about music production.

Cadenza is an AI-powered music production tool that helps users create professional-grade chord progressions effortlessly. By simply describing the chords or the vibe they want, users can generate midi chord progressions with smooth transitions. The tool allows users to prompt the AI with specific chord types or song descriptions, generate the midi file in real-time, and seamlessly integrate the created chords into their preferred DAW for further music production. Cadenza simplifies the music creation process by leveraging state-of-the-art AI algorithms to cater to both beginners and advanced music producers.

Masterpiece Studio is a powerful 3D creation tool that allows users to generate, edit, share, and use 3D models. With its intuitive interface and comprehensive set of features, Masterpiece Studio is perfect for artists, designers, engineers, and anyone else who wants to create stunning 3D models.

Embra is an AI assistant designed to help teams and professionals save time and be more productive. It integrates with your apps and data, and provides you with instant access to AI-powered commands and automations. Embra is used by startups, scaling businesses, and individuals alike.

Altern is a platform where users can discover and share the latest tools, products, and resources related to artificial intelligence (AI). Users can sign up to join the community and access a wide range of AI tools, companies, reviews, and newsletters. The platform features a curated list of top AI tools and products, as well as user-generated content. Altern aims to connect AI enthusiasts and professionals, providing a space for learning, collaboration, and innovation in the field of AI.

HarmonySnippetsAI is an AI application designed to help music creators and content producers identify engaging segments within their tracks quickly and efficiently. By leveraging AI algorithms, users can upload audio files and receive results that highlight the most captivating parts of their music. This tool is ideal for musicians looking to promote their work on social media platforms like Instagram, Facebook, and TikTok, enhancing audience engagement and expanding their reach.

LlamaBot is a Pythonic bot interface to Large Language Models (LLMs), providing an easy way to experiment with LLMs in Jupyter notebooks and build Python apps utilizing LLMs. It supports all models available in LiteLLM. Users can access LLMs either through local models with Ollama or by using API providers like OpenAI and Mistral. LlamaBot offers different bot interfaces like SimpleBot, ChatBot, QueryBot, and ImageBot for various tasks such as rephrasing text, maintaining chat history, querying documents, and generating images. The tool also includes CLI demos showcasing its capabilities and supports contributions for new features and bug reports from the community.

Awesome AI Tools is a curated list of popular tools and resources for artificial intelligence enthusiasts. It includes a wide range of tools such as machine learning libraries, deep learning frameworks, data visualization tools, and natural language processing resources. Whether you are a beginner or an experienced AI practitioner, this repository aims to provide you with a comprehensive collection of tools to enhance your AI projects and research. Explore the list to discover new tools, stay updated with the latest advancements in AI technology, and find the right resources to support your AI endeavors.

The 'llms-tools' repository is a comprehensive collection of AI tools, open-source projects, and research related to Large Language Models (LLMs) and Chatbots. It covers a wide range of topics such as AI in various domains, open-source models, chats & assistants, visual language models, evaluation tools, libraries, devices, income models, text-to-image, computer vision, audio & speech, code & math, games, robotics, typography, bio & med, military, climate, finance, and presentation. The repository provides valuable resources for researchers, developers, and enthusiasts interested in exploring the capabilities of LLMs and related technologies.

Awesome Generative AI is a curated list of modern Generative Artificial Intelligence projects and services. Generative AI technology creates original content like images, sounds, and texts using machine learning algorithms trained on large data sets. It can produce unique and realistic outputs such as photorealistic images, digital art, music, and writing. The repo covers a wide range of applications in art, entertainment, marketing, academia, and computer science.

AI2BMD is a program for efficiently simulating protein molecular dynamics with ab initio accuracy. The repository contains datasets, simulation programs, and public materials related to AI2BMD. It provides a Docker image for easy deployment and a standalone launcher program. Users can run simulations by downloading the launcher script and specifying simulation parameters. The repository also includes ready-to-use protein structures for testing. AI2BMD is designed for x86-64 GNU/Linux systems with recommended hardware specifications. The related research includes model architectures like ViSNet, Geoformer, and fine-grained force metrics for MLFF. Citation information and contact details for the AI2BMD Team are provided.

PaperQA is a minimal package for question and answering from PDFs or text files, providing very good answers with in-text citations. It uses OpenAI Embeddings to embed and search documents, and includes a process of embedding docs, queries, searching for top passages, creating summaries, using an LLM to re-score and select relevant summaries, putting summaries into prompt, and generating answers. The tool can be used to answer specific questions related to scientific research by leveraging citations and relevant passages from documents.

PINNACLE is a flexible geometric deep learning approach that trains on contextualized protein interaction networks to generate context-aware protein representations. It provides protein representations split across various cell-type contexts from different tissues and organs. The tool can be fine-tuned to study the genomic effects of drugs and nominate promising protein targets and cell-type contexts for further investigation. PINNACLE exemplifies the paradigm of incorporating context-specific effects for studying biological systems, especially the impact of disease and therapeutics.

This repository includes papers and blogs about Efficient Transformers, Length Extrapolation, Long Term Memory, Retrieval Augmented Generation(RAG), and Evaluation for Long Context Modeling.

Scientific Large Language Models (Sci-LLMs) is a repository that collects papers on scientific large language models, focusing on biology and chemistry domains. It includes textual, molecular, protein, and genomic languages, as well as multimodal language. The repository covers various large language models for tasks such as molecule property prediction, interaction prediction, protein sequence representation, protein sequence generation/design, DNA-protein interaction prediction, and RNA prediction. It also provides datasets and benchmarks for evaluating these models. The repository aims to facilitate research and development in the field of scientific language modeling.

The collection is actively updated with the help of an internal literature search engine.

Bittensor is an internet-scale neural network that incentivizes computers to provide access to machine learning models in a decentralized and censorship-resistant manner. It operates through a token-based mechanism where miners host, train, and procure machine learning systems to fulfill verification problems defined by validators. The network rewards miners and validators for their contributions, ensuring continuous improvement in knowledge output. Bittensor allows anyone to participate, extract value, and govern the network without centralized control. It supports tasks such as generating text, audio, images, and extracting numerical representations.

FuseMedML is a Python framework designed to accelerate machine learning-based discovery in the medical field by promoting code reuse. It provides a flexible design concept where data is stored in a nested dictionary, allowing easy handling of multi-modality information. The framework includes components for creating custom models, loss functions, metrics, and data processing operators. Additionally, FuseMedML offers 'batteries included' key components such as fuse.data for data processing, fuse.eval for model evaluation, and fuse.dl for reusable deep learning components. It supports PyTorch and PyTorch Lightning libraries and encourages the creation of domain extensions for specific medical domains.

This repository is a curated list of awesome large AI models in audio signal processing, focusing on the application of large language models to audio tasks. It includes survey papers, popular large audio models, automatic speech recognition, neural speech synthesis, speech translation, other speech applications, large audio models in music, and audio datasets. The repository aims to provide a comprehensive overview of recent advancements and challenges in applying large language models to audio signal processing, showcasing the efficacy of transformer-based architectures in various audio tasks.

The Intel® AI Reference Models repository contains links to pre-trained models, sample scripts, best practices, and tutorials for popular open-source machine learning models optimized by Intel to run on Intel® Xeon® Scalable processors and Intel® Data Center GPUs. It aims to replicate the best-known performance of target model/dataset combinations in optimally-configured hardware environments. The repository will be deprecated upon the publication of v3.2.0 and will no longer be maintained or published.

The Intel® AI Reference Models repository contains links to pre-trained models, sample scripts, best practices, and tutorials for popular open-source machine learning models optimized by Intel to run on Intel® Xeon® Scalable processors and Intel® Data Center GPUs. The purpose is to quickly replicate complete software environments showcasing the AI capabilities of Intel platforms. It includes optimizations for popular deep learning frameworks like TensorFlow and PyTorch, with additional plugins/extensions for improved performance. The repository is licensed under Apache License Version 2.0.

Colossal-AI is a deep learning system for large-scale parallel training. It provides a unified interface to scale sequential code of model training to distributed environments. Colossal-AI supports parallel training methods such as data, pipeline, tensor, and sequence parallelism and is integrated with heterogeneous training and zero redundancy optimizer.

AI Summer is a repository focused on providing workshops and resources for developing foundational skills in generative AI models and transformer models. The repository offers practical applications for inferencing and training, with a specific emphasis on understanding and utilizing advanced AI chat models like BingGPT. Participants are encouraged to engage in interactive programming environments, decide on projects to work on, and actively participate in discussions and breakout rooms. The workshops cover topics such as generative AI models, retrieval-augmented generation, building AI solutions, and fine-tuning models. The goal is to equip individuals with the necessary skills to work with AI technologies effectively and securely, both locally and in the cloud.

Phi-3-MLX is a versatile AI framework that leverages both the Phi-3-Vision multimodal model and the Phi-3-Mini-128K language model optimized for Apple Silicon using the MLX framework. It provides an easy-to-use interface for a wide range of AI tasks, from advanced text generation to visual question answering and code execution. The project features support for batched generation, flexible agent system, custom toolchains, model quantization, LoRA fine-tuning capabilities, and API integration for extended functionality.

A collection of papers related to knowledge distillation of large language models (LLMs). The repository focuses on techniques to transfer advanced capabilities from proprietary LLMs to smaller models, compress open-source LLMs, and refine their performance. It covers various aspects of knowledge distillation, including algorithms, skill distillation, verticalization distillation in fields like law, medical & healthcare, finance, science, and miscellaneous domains. The repository provides a comprehensive overview of the research in the area of knowledge distillation of LLMs.

A customized ChatGPT designed to excel in the field of synthetic biology, as a scientist, an engineer, and a business man

The lil brother of CF+ altering genomes without a license (not for the faint of heart)

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Matches resumes and search new jobs

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A creative aide for designing new GPT models, skilled in ideation and prompting.

Optimizes data systems and designs new data architectures.

I craft tests first, then code, validating new features.

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Assists in enhancing StackStorm packs with new actions and features.

Play Connect-4 against GPT with new twists and turns on the game!

Automatically creates new agents for specific tasks, and allows them to collaborate to complete tasks.

Quantum Hypothesis，About A New Universal Physical Theory

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