Best AI tools for< Computational Neuroscientist >

Altera is an applied research company focused on building digital humans - machines with fundamental human qualities. Led by Dr. Robert Yang, the team comprises computational neuroscientists, researchers, engineers, and builders from prestigious institutions like MIT, Stanford, and Google. Their mission is to create digital human beings that can live, care, and grow with us. The company's early research prototypes began in games, with a focus on developing digital humans that can interact and play games with users.

Bethge Lab is an AI research group at the University of Tübingen focusing on Neuro AI - Autonomous Lifelong Learning in Machines and Brains. They develop machine learning tools for neural data analysis and draw inspiration from the brain to address key problems in machine learning. Their research includes representation learning, probabilistic inference, generative modeling, behavioral data analysis, and neural data analysis. Additionally, they explore AI sciencepreneurship and collaborate with startups. Bethge Lab aims to advance the understanding of autonomous learning and develop economically feasible solutions for long-term human needs.

Artificial Intelligence: Foundations of Computational Agents, 3rd edition by David L. Poole and Alan K. Mackworth, Cambridge University Press 2023, is a book about the science of artificial intelligence (AI). It presents artificial intelligence as the study of the design of intelligent computational agents. The book is structured as a textbook, but it is accessible to a wide audience of professionals and researchers. In the last decades we have witnessed the emergence of artificial intelligence as a serious science and engineering discipline. This book provides an accessible synthesis of the field aimed at undergraduate and graduate students. It provides a coherent vision of the foundations of the field as it is today. It aims to provide that synthesis as an integrated science, in terms of a multi-dimensional design space that has been partially explored. As with any science worth its salt, artificial intelligence has a coherent, formal theory and a rambunctious experimental wing. The book balances theory and experiment, showing how to link them intimately together. It develops the science of AI together with its engineering applications.

Fotogram.ai is an AI-powered image editing tool that offers a wide range of features to enhance and transform your photos. With Fotogram.ai, users can easily apply filters, adjust colors, remove backgrounds, add effects, and retouch images with just a few clicks. The tool uses advanced AI algorithms to provide professional-level editing capabilities to users of all skill levels. Whether you are a photographer looking to streamline your workflow or a social media enthusiast wanting to create stunning visuals, Fotogram.ai has you covered.

EvolveLab is a digital solutions provider specializing in BIM management and app development for the AEC (Architecture, Engineering, and Construction) industry. They offer a range of powerful apps and services designed to empower architects, engineers, and contractors to streamline their workflows and bring their ideas to life more efficiently. With a focus on data-driven design and AI technology, EvolveLab's innovative tools help users enhance productivity and turn concepts into reality.

Proscia is a leading provider of digital pathology solutions for the modern laboratory. Its flagship product, Concentriq, is an enterprise pathology platform that enables anatomic pathology laboratories to achieve 100% digitization and deliver faster, more precise results. Proscia also offers a range of AI applications that can be used to automate tasks, improve diagnostic accuracy, and accelerate research. The company's mission is to perfect cancer diagnosis with intelligent software that changes the way the world practices pathology.

AIOZ Network is an AI-powered platform that focuses on Web3, AI, storage, and streaming services. It offers decentralized AI computation, fast and reliable storage solutions, and seamless video streaming for dApps within the network. AIOZ aims to empower a fast, secure, and decentralized future by providing a one-click integration of dApps on the AIOZ blockchain, supporting popular smart contract languages, and utilizing spare computing resources from a global community of nodes.

Live Portrait Ai Generator is an AI application that transforms static portrait images into lifelike videos using advanced animation technology. Users can effortlessly animate their portraits, fine-tune animations, unleash artistic styles, and make memories move with text, music, and other elements. The tool offers a seamless stitching technology and retargeting capabilities to achieve perfect results. Live Portrait Ai enhances generation quality and generalization ability through a mixed image-video training strategy and network architecture upgrades.

CCDS (Center for Computational & Data Sciences) is a research center at Independent University Bangladesh dedicated to artificial intelligence, data sciences, and computational science. The center has various wings focusing on AI, computational biology, physics, data science, human-computer interaction, and industry partnerships. CCDS explores the use of computation to understand nature and society, uncover hidden stories in data, and tackle complex challenges. The center collaborates with institutions like CERN and the Dunlap Institute for Astronomy and Astrophysics.

XtalPi is a world-leading technology company driven by artificial intelligence (AI) and robotics to innovate in the fields of life sciences and new materials. Founded in 2015 at the Massachusetts Institute of Technology (MIT), the company is committed to realizing digital and intelligent innovation in the fields of life sciences and new materials. Based on cutting-edge technologies and capabilities such as quantum physics, artificial intelligence, cloud computing, and large-scale experimental robot clusters, the company provides innovative technologies, services, and products for global industries such as biomedicine, chemicals, new energy, and new materials.

Iambic Therapeutics is a cutting-edge AI-driven drug discovery platform that tackles the most challenging design problems in drug discovery, addressing unmet patient need. Its physics-based AI algorithms drive a high-throughput experimental platform, converting new molecular designs to new biological insights each week. Iambic's platform optimizes target product profiles, exploring multiple profiles in parallel to ensure that molecules are designed to solve the right problems in disease biology. It also optimizes drug candidates, deeply exploring chemical space to reveal novel mechanisms of action and deliver diverse high-quality leads.

Cradle is a protein engineering platform that uses machine learning to design improved protein sequences. It allows users to import assay data, generate new sequences, test them in the lab, and import the results to improve the model. Cradle can be used to optimize multiple properties of a protein simultaneously, and it has been used by leading biotech teams to accelerate new and ongoing projects.

Owkin is a full-stack AI biotech company that integrates the best of human and artificial intelligence to deliver better drugs and diagnostics at scale. By understanding complex biology through AI, Owkin identifies new treatments, de-risks and accelerates clinical trials, and builds diagnostic tools to reduce time to impact for patients.

Variational AI is a company that uses generative AI to discover novel drug-like small molecules with optimized properties for defined targets. Their platform, Enki™, is the first commercially accessible foundation model for small molecules. It is designed to make generating novel molecule structures easy, with no data required. Users simply define their target product profile (TPP) and Enki does the rest. Enki is an ensemble of generative algorithms trained on decades worth of experimental data with proven results. The company was founded in September 2019 and is based in Vancouver, BC, Canada.

NLTK (Natural Language Toolkit) is a leading platform for building Python programs to work with human language data. It provides easy-to-use interfaces to over 50 corpora and lexical resources such as WordNet, along with a suite of text processing libraries for classification, tokenization, stemming, tagging, parsing, and semantic reasoning, wrappers for industrial-strength NLP libraries, and an active discussion forum. Thanks to a hands-on guide introducing programming fundamentals alongside topics in computational linguistics, plus comprehensive API documentation, NLTK is suitable for linguists, engineers, students, educators, researchers, and industry users alike.

Cerebras is an AI tool that offers products and services related to AI supercomputers, cloud system processors, and applications for various industries. It provides high-performance computing solutions, including large language models, and caters to sectors such as health, energy, government, scientific computing, and financial services. Cerebras specializes in AI model services, offering state-of-the-art models and training services for tasks like multi-lingual chatbots and DNA sequence prediction. The platform also features the Cerebras Model Zoo, an open-source repository of AI models for developers and researchers.

Lavo Life Sciences is an AI-accelerated crystal structure prediction application that aims to accelerate drug development by providing accurate crystal structure predictions for small molecule drugs. The application helps in de-risking pipelines, optimizing solid-state formulations, and avoiding late-stage surprises through cutting-edge AI technology. Lavo Life Sciences combines expertise in AI and computational chemistry to offer fast and efficient solutions for drug development teams, enabling them to discover novel polymorphs and make informed decisions to enhance drug development processes.

Bay Area AI is a technical AI meetup group based in San Francisco, CA, consisting of startup engineers, research scientists, computational linguists, mathematicians, and philosophers. The group focuses on understanding the meaning of text, reasoning, and human intent through technology to build new businesses and enhance the human experience in the modern connected world. They work on building systems with Machine Learning on top of Data Pipelines, exploring open-source solutions, and modeling human behavior in industry for practical results.

Wolfram is a comprehensive platform that unifies algorithms, data, notebooks, linguistics, and deployment to provide a powerful computation platform. It offers a range of products and services for various industries, including education, engineering, science, and technology. Wolfram is known for its revolutionary knowledge-based programming language, Wolfram Language, and its flagship product Wolfram|Alpha, a computational knowledge engine. The platform also includes Wolfram Cloud for cloud-based services, Wolfram Engine for software implementation, and Wolfram Data Framework for real-world data analysis.

NeuReality is an AI-centric solution designed to democratize AI adoption by providing purpose-built tools for deploying and scaling inference workflows. Their innovative AI-centric architecture combines hardware and software components to optimize performance and scalability. The platform offers a one-stop shop for AI inference, addressing barriers to AI adoption and streamlining computational processes. NeuReality's tools enable users to deploy, afford, use, and manage AI more efficiently, making AI easy and accessible for a wide range of applications.

Neuromatch Academy NeuroAI Course Syllabus is a repository that contains the schedule and licensing information for the NeuroAI course. The course is designed to provide participants with a comprehensive understanding of artificial intelligence in neuroscience. It covers various topics related to AI applications in neuroscience, including machine learning, data analysis, and computational modeling. The content is primarily accessed from the ebook provided in the repository, and the course is scheduled for July 15-26, 2024. The repository is shared under a Creative Commons Attribution 4.0 International License and software elements are additionally licensed under the BSD (3-Clause) License. Contributors to the project are acknowledged and welcomed to contribute further.

The Expected Parrot Domain-Specific Language (EDSL) package enables users to conduct computational social science and market research with AI. It facilitates designing surveys and experiments, simulating responses using large language models, and performing data labeling and other research tasks. EDSL includes built-in methods for analyzing, visualizing, and sharing research results. It is compatible with Python 3.9 - 3.11 and requires API keys for LLMs stored in a `.env` file.

NVIDIA BioNeMo Framework is a collection of programming tools, libraries, and models for computational drug discovery. It accelerates building and adapting biomolecular AI models by providing domain-specific, optimized models and tooling for GPU-based computational resources. The framework offers comprehensive documentation and support for both community and enterprise users.

AiiDA (www.aiida.net) is a workflow manager for computational science with a strong focus on provenance, performance and extensibility. **Features** * **Workflows:** Write complex, auto-documenting workflows in python, linked to arbitrary executables on local and remote computers. The event-based workflow engine supports tens of thousands of processes per hour with full checkpointing. * **Data provenance:** Automatically track inputs, outputs & metadata of all calculations in a provenance graph for full reproducibility. Perform fast queries on graphs containing millions of nodes. * **HPC interface:** Move your calculations to a different computer by changing one line of code. AiiDA is compatible with schedulers like SLURM, PBS Pro, torque, SGE or LSF out of the box. * **Plugin interface:** Extend AiiDA with plugins for new simulation codes (input generation & parsing), data types, schedulers, transport modes and more. * **Open Science:** Export subsets of your provenance graph and share them with peers or make them available online for everyone on the Materials Cloud. * **Open source:** AiiDA is released under the MIT open source license

Pipeline is a Python library designed for constructing computational flows for AI/ML models. It supports both development and production environments, offering capabilities for inference, training, and finetuning. The library serves as an interface to Mystic, enabling the execution of pipelines at scale and on enterprise GPUs. Users can also utilize this SDK with Pipeline Core on a private hosted cluster. The syntax for defining AI/ML pipelines is reminiscent of sessions in Tensorflow v1 and Flows in Prefect.

Apache Airavata is a software framework for executing and managing computational jobs on distributed computing resources. It supports local clusters, supercomputers, national grids, academic and commercial clouds. Airavata utilizes service-oriented computing, distributed messaging, and workflow composition. It includes a server package with an API, client SDKs, and a general-purpose UI implementation called Apache Airavata Django Portal.

Zero-True is a Python and SQL reactive computational notebook designed for building and collaborating on data-driven applications. It offers an integrated and simple environment with transparent updates, dynamic and interactive UI rendering, fast prototyping capabilities, and open-source community contributions. Users can create rich, reactive apps with ease and publish them confidently. Zero-True aims to improve data accessibility and foster collaboration among users.

LangSim is a tool developed to address the challenge of using simulation tools in computational chemistry and materials science, which typically require cryptic input files or programming experience. The tool provides a Large Language Model (LLM) extension with agents to couple the LLM to scientific simulation codes and calculate physical properties from a natural language interface. It aims to simplify the process of interacting with simulation tools by enabling users to query the large language model directly from a Python environment or a web-based interface.

EZKL is a library and command-line tool for doing inference for deep learning models and other computational graphs in a zk-snark (ZKML). It enables the following workflow: 1. Define a computational graph, for instance a neural network (but really any arbitrary set of operations), as you would normally in pytorch or tensorflow. 2. Export the final graph of operations as an .onnx file and some sample inputs to a .json file. 3. Point ezkl to the .onnx and .json files to generate a ZK-SNARK circuit with which you can prove statements such as: > "I ran this publicly available neural network on some private data and it produced this output" > "I ran my private neural network on some public data and it produced this output" > "I correctly ran this publicly available neural network on some public data and it produced this output" In the backend we use the collaboratively-developed Halo2 as a proof system. The generated proofs can then be verified with much less computational resources, including on-chain (with the Ethereum Virtual Machine), in a browser, or on a device.

AIT is a repository focused on Algorithmic Information Theory, specifically utilizing Binary Lambda Calculus. It provides resources and tools for studying and implementing algorithms based on information theory principles. The repository aims to explore the relationship between algorithms and information theory through the lens of Binary Lambda Calculus, offering insights into computational complexity and data compression techniques.

MaskLLM is a learnable pruning method that establishes Semi-structured Sparsity in Large Language Models (LLMs) to reduce computational overhead during inference. It is scalable and benefits from larger training datasets. The tool provides examples for running MaskLLM with Megatron-LM, preparing LLaMA checkpoints, pre-tokenizing C4 data for Megatron, generating prior masks, training MaskLLM, and evaluating the model. It also includes instructions for exporting sparse models to Huggingface.

PEFT (Parameter-Efficient Fine-Tuning) is a collection of state-of-the-art methods that enable efficient adaptation of large pretrained models to various downstream applications. By only fine-tuning a small number of extra model parameters instead of all the model's parameters, PEFT significantly decreases the computational and storage costs while achieving performance comparable to fully fine-tuned models.

AutoGPTQ is an easy-to-use LLM quantization package with user-friendly APIs, based on GPTQ algorithm (weight-only quantization). It provides a simple and efficient way to quantize large language models (LLMs) to reduce their size and computational cost while maintaining their performance. AutoGPTQ supports a wide range of LLM models, including GPT-2, GPT-J, OPT, and BLOOM. It also supports various evaluation tasks, such as language modeling, sequence classification, and text summarization. With AutoGPTQ, users can easily quantize their LLM models and deploy them on resource-constrained devices, such as mobile phones and embedded systems.

This repository contains Jupyter-based tutorials for NLP, ML, AI in Python for classes in Computational Linguistics, Natural Language Processing (NLP), Machine Learning (ML), and Artificial Intelligence (AI) at Indiana University.

SciMLBenchmarks.jl holds webpages, pdfs, and notebooks showing the benchmarks for the SciML Scientific Machine Learning Software ecosystem, including: * Benchmarks of equation solver implementations * Speed and robustness comparisons of methods for parameter estimation / inverse problems * Training universal differential equations (and subsets like neural ODEs) * Training of physics-informed neural networks (PINNs) * Surrogate comparisons, including radial basis functions, neural operators (DeepONets, Fourier Neural Operators), and more The SciML Bench suite is made to be a comprehensive open source benchmark from the ground up, covering the methods of computational science and scientific computing all the way to AI for science.

PyTensor is a Python library that allows one to define, optimize, and efficiently evaluate mathematical expressions involving multi-dimensional arrays. It provides the computational backend for `PyMC `__. PyTensor is a fork of `Aesara `__, which is a fork of `Theano `__. PyTensor maintains a static graph which can be modified in-place to allow for advanced optimizations. Contrary to PyTorch and TensorFlow, PyTensor maintains a static graph which can be modified in-place to allow for advanced optimizations.

BitMat is a Python package designed to optimize matrix multiplication operations by utilizing custom kernels written in Triton. It leverages the principles outlined in the "1bit-LLM Era" paper, specifically utilizing packed int8 data to enhance computational efficiency and performance in deep learning and numerical computing tasks.

MachineSoM is a code repository for the paper 'Exploring Collaboration Mechanisms for LLM Agents: A Social Psychology View'. It focuses on the emergence of intelligence from collaborative and communicative computational modules, enabling effective completion of complex tasks. The repository includes code for societies of LLM agents with different traits, collaboration processes such as debate and self-reflection, and interaction strategies for determining when and with whom to interact. It provides a coding framework compatible with various inference services like Replicate, OpenAI, Dashscope, and Anyscale, supporting models like Qwen and GPT. Users can run experiments, evaluate results, and draw figures based on the paper's content, with available datasets for MMLU, Math, and Chess Move Validity.

The 'Conference-Acceptance-Rate' repository provides acceptance rates for top-tier AI-related conferences in the fields of Natural Language Processing, Computational Linguistics, Computer Vision, Pattern Recognition, Machine Learning, Learning Theory, Artificial Intelligence, Data Mining, Information Retrieval, Speech Processing, and Signal Processing. The data includes acceptance rates for long papers and short papers over several years for each conference, allowing researchers to track trends and make informed decisions about where to submit their work.

HippoRAG is a novel retrieval augmented generation (RAG) framework inspired by the neurobiology of human long-term memory that enables Large Language Models (LLMs) to continuously integrate knowledge across external documents. It provides RAG systems with capabilities that usually require a costly and high-latency iterative LLM pipeline for only a fraction of the computational cost. The tool facilitates setting up retrieval corpus, indexing, and retrieval processes for LLMs, offering flexibility in choosing different online LLM APIs or offline LLM deployments through LangChain integration. Users can run retrieval on pre-defined queries or integrate directly with the HippoRAG API. The tool also supports reproducibility of experiments and provides data, baselines, and hyperparameter tuning scripts for research purposes.

A digital homage to honor Stephen Wolfram's impact on computational science and technology and to celebrate his dedication to public education, powered by Stephen Wolfram's wealth of public presentations, writings, and live streams.

Expert in generating and explaining mathematical, chemical, and computational formulas.

Assists in evaluating protein engineering tools.

💡 Inventor of languages

Skilled in Python, Linux, R, and more.

AI protein design assistant

Expert in Marian NMT models and training

大型语言模型的学习和训练指导专家

Formal OpenMC Python API and debugging expert.

Blends academic insights & accessible explanations on P vs NP, drawing from Lance Fortnow's works.

A playful CFD advisor

Expert in OpenFOAM for CFD queries

Expert in GH-Python scripting & Grasshopper components

Advises on Bioconda recipes, following community guidelines

A interactive chatbot

Advanced AI for complex computations and data analysis.